H2GJMBGX2_n01_mb12.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H2GJMBGX2_n01_mb12.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	27529051
Sequences flagged as poor quality	0
Sequence length	50
%GC	40

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTGACCAATCTCGTATGC	1284489	4.665939991901646	TruSeq Adapter, Index 4 (100% over 50bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	89096	0.32364355749132073	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTATGC	145015	42.51835	44
CTCGTAT	142435	42.1761	42
TCGTATG	145930	42.15376	43
TCTCGTA	141510	42.153214	41
ATCTCGT	141425	41.9789	40
AATCTCG	141290	41.91275	39
ACCAATC	140920	41.579784	36
CCAATCT	142335	41.4916	37
CAATCTC	142680	41.411316	38
GACCAAT	144790	41.34966	35
ACTGACC	147635	41.244232	32
CTGACCA	148605	40.905365	33
TGACCAA	148025	40.77428	34
GTCACTG	152500	40.5042	29
AGTCACT	152885	40.503147	28
CAGTCAC	153430	40.41814	27
CCAGTCA	153395	40.397167	26
CGTCTGA	154555	40.37329	16
CACTGAC	151695	40.341797	31
ACGTCTG	155120	40.247948	15