FastQCFastQC Report
Wed 10 Apr 2024
H2G7GDRX5_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH2G7GDRX5_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1017675221
Sequences flagged as poor quality0
Sequence length10
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACAGTAACTA52323699351.4149290660581No Hit
CACCGCACCA44753990743.97669293355036No Hit
GGGGGGGGGG212687512.0899350363567515No Hit
ACAGTACGAA17375230.17073452945947282No Hit
CACGGACCAA15533210.15263425579662412No Hit
ACCGGACCAA14048820.13804816811983672No Hit
CACCGCACAA13950360.13708066888267095No Hit
AAACTAACAA12655320.12435519445550104No Hit
CACCGACCAA11052860.10860891345216314No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)