H2FN2BGX3_n01_lblchip_04.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H2FN2BGX3_n01_lblchip_04.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	22269344
Sequences flagged as poor quality	0
Sequence length	75
%GC	41

$Per base quality graph$

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGAGTGGATATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAA	80954	0.36352215853327335	TruSeq Adapter, Index 7 (97% over 36bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TATGCCG	13090	50.026344	48
GCCGTCT	13420	48.736305	51
GTATGCC	13540	48.389763	47
CTCGTAT	14185	45.7014	44
AGTCACG	15030	43.825684	28
TATCTCG	14785	43.649387	41
TCTCGTA	15150	42.786827	43
ATCTCGT	15515	41.68863	42
GAGTGGA	16530	39.82043	34
CGTATGC	17620	37.478745	46
GCTTGAA	17740	37.195377	61
ATGCCGT	17815	36.854446	49
TCGTATG	18740	35.164978	45
ACGAGTG	19210	34.444195	32
CGAGTGG	19265	34.238514	33
ATATCTC	19080	34.07501	40
CCGTCTT	20045	33.140877	52
ACGTCTG	20345	32.5312	15
CGTCTGA	20465	32.3557	16
CAGTCAC	20620	32.087677	27