H2FN2BGX3_n01_lblchip_02.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H2FN2BGX3_n01_lblchip_02.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	23059355
Sequences flagged as poor quality	0
Sequence length	75
%GC	42

Per base quality graph

Per base quality graph

Per Sequence quality graph

$Per base sequence content$

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTGAAACGATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAA	295701	1.2823472295734204	TruSeq Adapter, Index 19 (97% over 40bp)
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACGTGAAACGATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAA	39696	0.17214705268208932	TruSeq Adapter, Index 19 (97% over 40bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TATGCCG	42710	57.183372	48
GCCGTCT	43210	56.384678	51
GTATGCC	43390	56.287933	47
CTCGTAT	42720	55.140324	44
TCTCGTA	42985	54.009293	43
GTCACGT	45830	53.435066	29
AGTCACG	45985	53.336567	28
ACGATCT	42575	53.271294	39
TCACGTG	46000	53.24209	30
CGTATGC	46105	53.130177	46
CACGTGA	46205	53.082413	31
CGATCTC	42970	52.78011	40
ATCTCGT	43155	52.68237	42
ATGCCGT	46835	52.153404	49
TCGTATG	46935	51.976986	45
CGTGAAA	47620	51.463844	33
GAAACGA	47835	50.23686	36
GCTTGAA	49035	49.90825	61
AAACGAT	47780	49.37432	37
GTGAAAC	49975	49.046017	34