FastQCFastQC Report
Fri 24 Jan 2020
H2F7JAFX2_n02_ALSPL9_col_B_n.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH2F7JAFX2_n02_ALSPL9_col_B_n.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7109882
Sequences flagged as poor quality0
Sequence length76
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCTGGG4250.00114613128.23527963
GTGTCAG39050.07.259960770
GTGTGTC44850.06.86737168
GGGTAGC5150.00750585746.796151667
ACGCCCA8401.3993329E-56.66670165
CGTGCCC7206.7533297E-46.319432348
GTCAGTA35450.06.31879170
TGTCAGT38850.06.126157370
GTGCCCA9052.7719844E-45.80109449
GCCCACG7350.0058416325.71427551
CTAACGC9354.3118937E-45.61500268
GGCGGCA7550.0078583185.562903438
CGGACTG10707.7834404E-55.5607376
CGGCATG8300.00369739445.48191754
TGTGTCA58050.05.426384469
CTGGGTA8450.00456653685.384642665
AGAGTGT71600.05.279356570
GAGTGTG59300.05.19395666
CTCGGCA10805.2814983E-45.185175452
Produced by FastQC (version 0.11.5)