H2CYMAFXY_n02_412_nextera.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H2CYMAFXY_n02_412_nextera.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2975328
Sequences flagged as poor quality	0
Sequence length	150
%GC	42

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTAGTAACAAGAGCATTTTTCAATAACGTTTCTTTGTAATGATGACAAGC	5668	0.19050000537755837	No Hit
GTAGTAACAAGAGCATTTTTCAGAAACAATTAAGCTCAGTAAGAACAATT	5416	0.18203035093945946	No Hit
TCTACATACTGTCCAATCAAAAGTCTGTCTCCCCTGGGTTAATTTGTCTA	4827	0.16223421417739492	No Hit
CTATAGAACATGCTTGTAAATTCAAACATTCCAGTTTCGTTGCAGTAACT	4060	0.13645554372492713	No Hit
GTATGTAAAGTATGATGGAGACCCATGGACTGACAGTGAAGCCCTTGCTC	3546	0.11918013745039202	No Hit
ATATAACATAATAAGAAAATTCAATACATCAAGAATTGAAAAGAACCCTT	3299	0.11087853171146173	No Hit
GTATAGTATGGTTATCCAATCCATCATCATTTAAAGATGCAGCAGTAATG	3090	0.10385409608621302	No Hit
ATACTATACTGCTCTATTACTCAACTGCTGCTTCTAGTTTGGCTGTAACA	2986	0.10035868314350552	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGCACGC	745	0.0	95.72502	1
GCACGCA	795	0.0	89.688	2
GAAACAC	2275	0.0	83.56756	4
ACGCACT	890	0.0	83.341705	4
AAACACG	2535	0.0	74.99022	5
CGGTGCA	405	0.0	74.68967	2
CTCTACG	30	0.0019875763	72.02218	2
CGTGCGG	30	0.001987974	72.01855	3
CGCACTT	960	0.0	72.00766	5
GCGGTGC	1210	0.0	69.05883	1
AACACGA	2180	0.0	67.70907	6
AACACGT	640	0.0	67.50264	6
CACGCAC	1060	0.0	67.26261	3
GTAACAA	4400	0.0	66.94002	4
CACTCGA	90	3.0013325E-10	64.00358	9
ACGTGCA	985	0.0	61.419933	2
ACACGAG	2485	0.0	60.266933	7
CGGTGCC	465	0.0	57.307972	2
TAACAAG	5275	0.0	55.831528	5
CTGTACG	40	0.00621865	54.00302	9