H2CYMAFXY_n01_346_nextera.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H2CYMAFXY_n01_346_nextera.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3654547
Sequences flagged as poor quality	0
Sequence length	150
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AGAAACAACAGCTATGAGTGACTTGGCTAAGATTCACCCATGGGTCACTC	11837	0.3238978729785114	No Hit
CTTTATAGCAACGCAAAAAATGGATGAACACAGCTGTGTCCTGTGAACTC	9931	0.27174366617805157	No Hit
GTAGAAACACGAGCCAAAATAAAACTCTTTTCCTTATAAATTACACAATC	7766	0.21250239769799104	No Hit
AAATTACACAATCTCAGTTATTTCTTTATAGCAACGCAAAAAATGGATGA	6668	0.18245763428408499	No Hit
GTAGTAACAAGAGCGAAACCCCATCTCAAAAAAACAAAACCCAAAACACC	6194	0.1694874905152403	No Hit
AAACAACAGCTCTCGAGATTGGGAATAGGTAATAAAGAAAATGAATCCTG	5234	0.14321884490745365	No Hit
GTAGAAACACGTGCCAAAATAAAACTCTTTTCCTTATAAATTACACAATC	4632	0.12674621505757075	No Hit
ATCTCAGTTATTTCTTTATAGCAACGCAAAAAATGGATGAACACAGCTGT	4562	0.12483079298200297	No Hit
GTAGAAACAACAGCTCTCGAGATTGGGAATAGGTAATAAAGAAAATGAAT	3707	0.10143528048756796	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTAGTAA	5995	107.64314	1
TAGTAAC	6850	95.026436	2
AAACACG	6115	86.8942	5
GTAACAA	7460	85.41524	4
TAACAAG	7390	85.05517	5
AACACGT	2970	79.03109	6
GCACGCA	1900	78.06928	2
AACACGA	4115	76.9874	6
AGCACGC	1945	75.54021	1
CGCACTT	1605	69.98105	5
AGTAACA	9445	69.67756	3
GTAGAAA	11375	69.33145	1
ACACGTG	3470	67.643326	7
ACACGAG	4860	65.03768	7
ACGAGCC	3080	61.94867	9
ACGCACT	2520	61.14263	4
GAAGCGG	1575	59.904343	1
GCGGTGA	470	59.74446	4
CACGCAC	2575	58.161396	3
CAAGAGC	10880	57.17704	8