FastQCFastQC Report
Wed 18 Dec 2019
H2CVLAFX2_n02_MYC2_col_B_m.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH2CVLAFX2_n02_MYC2_col_B_m.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2700770
Sequences flagged as poor quality0
Sequence length76
%GC32

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG54750.2027199650470051No Hit

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGACTG1150.001009273118.258786
AGGGGGG5650.014.2561861
GCGGACT1950.002302042712.56382755
CATACGG5100.00682732986.862721468
AGAAGTC9309.071702E-66.3977095
TAGGGAA33950.06.28910470
GTAGGGA31900.06.03446269
AGAGTGT23300.06.008562668
GAGTGTT22250.05.820204769
TGTAGGG34300.05.612225568
AAGAGTG26450.05.29357667
GAAAGGT9300.0024406935.26879948
GTGTAGG36150.05.22877967
Produced by FastQC (version 0.11.5)