FastQCFastQC Report
Fri 30 Aug 2024
H2CMKBGXW_n02_undetermined.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH2CMKBGXW_n02_undetermined.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16390854
Sequences flagged as poor quality0
Sequence length36
%GC50

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG4560752.7824968729512203No Hit
CGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG743520.45361882913483337No Hit
ACTGTCTCTTATACACATCTGACGCTGCCGACGAAA421910.25740574591171395No Hit
ACTCTCTCTTATACACATCTGACGCTGCCGACGAAA365730.22313053365004654No Hit
CCTGTCTCTTATACACATCTGACGCTGCCGACGAAA305190.1861953013552558No Hit
ACTGTCTCTTATACACATCTGACGCTGCCGACGATT178030.10861545103141056No Hit
ACTGTCTCTTATACACATCTGACGCTGCCGACGACC177000.10798705180340208No Hit
ACTGTCTCTTATACACATCTGACGCTGCCGACGACA173540.10587611847436382No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)