FastQCFastQC Report
Fri 30 Aug 2024
H2CMKBGXW_n02_HEK17.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH2CMKBGXW_n02_HEK17.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15600570
Sequences flagged as poor quality0
Sequence length36
%GC52

[WARN]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTGTCTCTTATACACATCTGACGCTGCCGACGATT4034722.586264476233881No Hit
ACTGTCTCTTATACACATCTGACGCTGCCGACGATT3717542.3829513921606713No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)