FastQCFastQC Report
Fri 30 Aug 2024
H2CMKBGXW_n01_undetermined.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH2CMKBGXW_n01_undetermined.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16390854
Sequences flagged as poor quality0
Sequence length36
%GC49

[WARN]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACTGTCTCTTATACACATCTCCGAGCCCACGAGACT5367643.274777507017023No Hit
ACTGTCTCTTATACACATCTCCGAGCCCACGAGACC2824061.7229486639317269No Hit
TCTGTCTCTTATACACATCTCCGAGCCCACGAGACT1976341.2057577963905968No Hit
TCTGTCTCTTATACACATCTCCGAGCCCACGAGACC633210.38631910210413684No Hit
GCTGTCTCTTATACACATCTCCGAGCCCACGAGACT569650.3475413788689717No Hit
ACTGTCTCTTATACACATCTCCGAGCCCACGAGACA531440.32422959779887No Hit
ACTGTCTCTTATACACATCTCCGAGCCCACGAGACG339320.20701788936683835No Hit
GCTGTCTCTTATACACATCTCCGAGCCCACGAGACC287530.1754210000284305No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)