FastQCFastQC Report
Fri 30 Aug 2024
H2CMKBGXW_n01_HEK20.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH2CMKBGXW_n01_HEK20.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15759161
Sequences flagged as poor quality0
Sequence length36
%GC50

[WARN]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACTGTCTCTTATACACATCTCCGAGCCCACGAGACC478820.30383597197845746No Hit
TCTGTCTCTTATACACATCTCCGAGCCCACGAGACC446610.28339706663317926No Hit
GCTGTCTCTTATACACATCTCCGAGCCCACGAGACC431460.27378361068841167No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)