FastQCFastQC Report
Fri 30 Aug 2024
H2CMKBGXW_n01_HEK12.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH2CMKBGXW_n01_HEK12.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17293163
Sequences flagged as poor quality0
Sequence length36
%GC50

[WARN]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACTGTCTCTTATACACATCTCCGAGCCCACGAGACA1175740.6798871900993473No Hit
TCTGTCTCTTATACACATCTCCGAGCCCACGAGACA1105660.6393625041295221No Hit
GCTGTCTCTTATACACATCTCCGAGCCCACGAGACA331170.19150342826237166No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)