MultiQC Report

Toolbox

MultiQC Toolbox

Highlight Samples

This report has flat image plots that won't be highlighted.
See the documentation for help.

Regex mode off

Rename Samples

This report has flat image plots that won't be renamed.
See the documentation for help.

Click here for bulk input.

Paste two columns of a tab-delimited table here (eg. from Excel).

First column should be the old name, second column the new name.

Regex mode off

Show / Hide Samples

This report has flat image plots that won't be hidden.
See the documentation for help.

Regex mode off

Aspect ratio

Plot scaling

Download the raw data used to create the plots in this report below:

Format:

Note that additional data was saved in multiqc_data when this report was generated.

Choose Plots

If you use plots from MultiQC in a publication or presentation, please cite:

MultiQC: Summarize analysis results for multiple tools and samples in a single report
Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
Bioinformatics (2016)
doi: 10.1093/bioinformatics/btw354
PMID: 27312411

Save Settings

You can save the toolbox settings for this report to the browser.

Load Settings

Choose a saved report profile from the dropdown box below:

About MultiQC

This report was generated using MultiQC, version 1.0.dev0

You can see a YouTube video describing how to use MultiQC reports here: https://youtu.be/qPbIlO_KWN0

For more information about MultiQC, including other videos and extensive documentation, please visit http://multiqc.info

You can report bugs, suggest improvements and find the source code for MultiQC on GitHub: https://github.com/ewels/MultiQC

MultiQC is published in Bioinformatics:

MultiQC: Summarize analysis results for multiple tools and samples in a single report
Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
Bioinformatics (2016)
doi: 10.1093/bioinformatics/btw354
PMID: 27312411

A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

Loading report..

Report generated on 2018-05-14, 18:05 based on data in: /mnt/gencore/sites/core-fastqc.bio.nyu.edu/html/H27VGAFXY/merged

General Statistics

Showing ¹⁷⁰/₁₇₀ rows and ³/₅ columns.

Sample Name	% Dups	% GC	Length	% Failed	M Seqs
H27VGAFXY_n01_zt14wtlarvs1	20.5%	15%	75 bp	42%	0.0
H27VGAFXY_n01_zt14wtlarvs10	13.8%	28%	75 bp	33%	0.0
H27VGAFXY_n01_zt14wtlarvs11	8.5%	21%	75 bp	42%	0.0
H27VGAFXY_n01_zt14wtlarvs12	13.7%	27%	75 bp	42%	0.0
H27VGAFXY_n01_zt14wtlarvs13	65.8%	53%	75 bp	33%	4.4
H27VGAFXY_n01_zt14wtlarvs14	65.4%	46%	75 bp	42%	4.9
H27VGAFXY_n01_zt14wtlarvs15	10.3%	33%	75 bp	42%	0.0
H27VGAFXY_n01_zt14wtlarvs17	18.9%	14%	75 bp	42%	0.0
H27VGAFXY_n01_zt14wtlarvs18	58.7%	47%	75 bp	42%	5.6
H27VGAFXY_n01_zt14wtlarvs19	24.4%	17%	75 bp	42%	0.0
H27VGAFXY_n01_zt14wtlarvs2	6.6%	30%	75 bp	58%	0.0
H27VGAFXY_n01_zt14wtlarvs20	14.7%	23%	75 bp	42%	0.0
H27VGAFXY_n01_zt14wtlarvs21	16.2%	24%	75 bp	42%	0.0
H27VGAFXY_n01_zt14wtlarvs22	3.8%	39%	75 bp	58%	0.0
H27VGAFXY_n01_zt14wtlarvs23	64.0%	45%	75 bp	42%	3.4
H27VGAFXY_n01_zt14wtlarvs25	32.1%	12%	75 bp	42%	0.0
H27VGAFXY_n01_zt14wtlarvs26	64.2%	46%	75 bp	42%	5.5
H27VGAFXY_n01_zt14wtlarvs27	56.4%	47%	75 bp	33%	6.7
H27VGAFXY_n01_zt14wtlarvs28	66.5%	47%	75 bp	42%	7.2
H27VGAFXY_n01_zt14wtlarvs29	20.2%	24%	75 bp	33%	0.0
H27VGAFXY_n01_zt14wtlarvs3	25.7%	20%	75 bp	33%	0.0
H27VGAFXY_n01_zt14wtlarvs30	60.0%	46%	75 bp	42%	5.0
H27VGAFXY_n01_zt14wtlarvs31	61.9%	46%	75 bp	42%	4.1
H27VGAFXY_n01_zt14wtlarvs32	0.0%	47%	75 bp	36%	0.0
H27VGAFXY_n01_zt14wtlarvs33	17.3%	15%	75 bp	42%	0.0
H27VGAFXY_n01_zt14wtlarvs34	7.0%	33%	75 bp	25%	0.0
H27VGAFXY_n01_zt14wtlarvs35	64.7%	47%	75 bp	42%	4.7
H27VGAFXY_n01_zt14wtlarvs36	4.1%	31%	75 bp	50%	0.0
H27VGAFXY_n01_zt14wtlarvs37	16.0%	25%	75 bp	33%	0.0
H27VGAFXY_n01_zt14wtlarvs38	5.6%	36%	75 bp	42%	0.0
H27VGAFXY_n01_zt14wtlarvs39	62.5%	45%	75 bp	42%	3.3
H27VGAFXY_n01_zt14wtlarvs4	15.6%	24%	75 bp	42%	0.0
H27VGAFXY_n01_zt14wtlarvs41	16.8%	15%	75 bp	42%	0.0
H27VGAFXY_n01_zt14wtlarvs42	6.9%	30%	75 bp	33%	0.0
H27VGAFXY_n01_zt14wtlarvs43	6.5%	23%	75 bp	42%	0.0
H27VGAFXY_n01_zt14wtlarvs44	5.9%	28%	75 bp	50%	0.0
H27VGAFXY_n01_zt14wtlarvs45	64.0%	46%	75 bp	42%	4.2
H27VGAFXY_n01_zt14wtlarvs46	56.6%	47%	75 bp	42%	3.4
H27VGAFXY_n01_zt14wtlarvs47	1.6%	31%	75 bp	50%	0.0
H27VGAFXY_n01_zt14wtlarvs49	31.5%	19%	75 bp	42%	0.0
H27VGAFXY_n01_zt14wtlarvs5	7.2%	27%	75 bp	50%	0.0
H27VGAFXY_n01_zt14wtlarvs50	59.3%	47%	75 bp	42%	4.0
H27VGAFXY_n01_zt14wtlarvs51	71.7%	46%	75 bp	42%	5.4
H27VGAFXY_n01_zt14wtlarvs52	10.2%	29%	75 bp	33%	0.0
H27VGAFXY_n01_zt14wtlarvs53	14.5%	29%	75 bp	33%	0.0
H27VGAFXY_n01_zt14wtlarvs54	9.4%	36%	75 bp	42%	0.0
H27VGAFXY_n01_zt14wtlarvs55	13.2%	32%	75 bp	42%	0.0
H27VGAFXY_n01_zt14wtlarvs57	5.9%	21%	75 bp	42%	0.0
H27VGAFXY_n01_zt14wtlarvs58	0.0%	39%	75 bp	42%	0.0
H27VGAFXY_n01_zt14wtlarvs59	7.6%	30%	75 bp	42%	0.0
H27VGAFXY_n01_zt14wtlarvs6	11.8%	29%	75 bp	33%	0.0
H27VGAFXY_n01_zt14wtlarvs60	10.0%	24%	75 bp	42%	0.0
H27VGAFXY_n01_zt14wtlarvs61	72.3%	47%	75 bp	42%	5.2
H27VGAFXY_n01_zt14wtlarvs62	0.0%	46%	75 bp	42%	0.0
H27VGAFXY_n01_zt14wtlarvs63	7.4%	38%	75 bp	50%	0.0
H27VGAFXY_n01_zt14wtlarvs65	15.1%	15%	75 bp	42%	0.0
H27VGAFXY_n01_zt14wtlarvs66	5.7%	36%	75 bp	42%	0.0
H27VGAFXY_n01_zt14wtlarvs67	63.3%	48%	75 bp	42%	5.6
H27VGAFXY_n01_zt14wtlarvs68	5.1%	35%	75 bp	42%	0.0
H27VGAFXY_n01_zt14wtlarvs69	66.7%	47%	75 bp	42%	4.5
H27VGAFXY_n01_zt14wtlarvs7	61.3%	45%	75 bp	42%	3.0
H27VGAFXY_n01_zt14wtlarvs70	4.0%	39%	75 bp	25%	0.0
H27VGAFXY_n01_zt14wtlarvs71	6.2%	38%	75 bp	42%	0.0
H27VGAFXY_n01_zt14wtlarvs73	16.8%	20%	75 bp	42%	0.0
H27VGAFXY_n01_zt14wtlarvs74	59.9%	51%	75 bp	33%	4.3
H27VGAFXY_n01_zt14wtlarvs75	14.0%	20%	75 bp	42%	0.0
H27VGAFXY_n01_zt14wtlarvs76	14.9%	20%	75 bp	50%	0.0
H27VGAFXY_n01_zt14wtlarvs77	69.8%	45%	75 bp	42%	4.1
H27VGAFXY_n01_zt14wtlarvs78	3.6%	40%	75 bp	50%	0.0
H27VGAFXY_n01_zt14wtlarvs79	10.0%	32%	75 bp	42%	0.0
H27VGAFXY_n01_zt14wtlarvs81	61.4%	52%	75 bp	33%	4.2
H27VGAFXY_n01_zt14wtlarvs82	63.4%	52%	75 bp	33%	4.8
H27VGAFXY_n01_zt14wtlarvs83	64.1%	52%	75 bp	42%	5.2
H27VGAFXY_n01_zt14wtlarvs84	20.1%	21%	75 bp	42%	0.0
H27VGAFXY_n01_zt14wtlarvs85	70.7%	45%	75 bp	42%	3.4
H27VGAFXY_n01_zt14wtlarvs86	48.3%	47%	75 bp	33%	3.4
H27VGAFXY_n01_zt14wtlarvs87	17.0%	26%	75 bp	33%	0.0
H27VGAFXY_n01_zt14wtlarvs89	36.5%	10%	75 bp	42%	0.0
H27VGAFXY_n01_zt14wtlarvs9	56.0%	47%	75 bp	42%	2.9
H27VGAFXY_n01_zt14wtlarvs90	14.7%	19%	75 bp	42%	0.0
H27VGAFXY_n01_zt14wtlarvs91	26.9%	18%	75 bp	42%	0.0
H27VGAFXY_n01_zt14wtlarvs92	64.8%	46%	75 bp	42%	6.4
H27VGAFXY_n01_zt14wtlarvs93	21.1%	21%	75 bp	42%	0.0
H27VGAFXY_n01_zt14wtlarvs94	11.1%	27%	75 bp	42%	0.0
H27VGAFXY_n01_zt14wtlarvs95	13.9%	24%	75 bp	50%	0.0
H27VGAFXY_n02_zt14wtlarvs1	2.6%	28%	75 bp	50%	0.0
H27VGAFXY_n02_zt14wtlarvs10	1.2%	35%	75 bp	50%	0.0
H27VGAFXY_n02_zt14wtlarvs11	0.9%	24%	75 bp	33%	0.0
H27VGAFXY_n02_zt14wtlarvs12	0.0%	34%	75 bp	42%	0.0
H27VGAFXY_n02_zt14wtlarvs13	59.5%	52%	75 bp	33%	4.4
H27VGAFXY_n02_zt14wtlarvs14	63.4%	46%	75 bp	42%	4.9
H27VGAFXY_n02_zt14wtlarvs15	0.9%	36%	75 bp	58%	0.0
H27VGAFXY_n02_zt14wtlarvs17	0.5%	23%	75 bp	42%	0.0
H27VGAFXY_n02_zt14wtlarvs18	56.8%	47%	75 bp	42%	5.6
H27VGAFXY_n02_zt14wtlarvs19	3.0%	29%	75 bp	50%	0.0
H27VGAFXY_n02_zt14wtlarvs2	0.0%	30%	75 bp	50%	0.0
H27VGAFXY_n02_zt14wtlarvs20	0.0%	30%	75 bp	50%	0.0
H27VGAFXY_n02_zt14wtlarvs21	2.6%	31%	75 bp	50%	0.0
H27VGAFXY_n02_zt14wtlarvs22	1.3%	40%	75 bp	58%	0.0
H27VGAFXY_n02_zt14wtlarvs23	62.6%	45%	75 bp	42%	3.4
H27VGAFXY_n02_zt14wtlarvs25	3.7%	27%	75 bp	50%	0.0
H27VGAFXY_n02_zt14wtlarvs26	62.3%	46%	75 bp	42%	5.5
H27VGAFXY_n02_zt14wtlarvs27	54.5%	47%	75 bp	42%	6.7
H27VGAFXY_n02_zt14wtlarvs28	63.2%	47%	75 bp	42%	7.2
H27VGAFXY_n02_zt14wtlarvs29	2.3%	32%	75 bp	50%	0.0
H27VGAFXY_n02_zt14wtlarvs3	0.6%	26%	75 bp	50%	0.0
H27VGAFXY_n02_zt14wtlarvs30	57.3%	46%	75 bp	42%	5.0
H27VGAFXY_n02_zt14wtlarvs31	59.3%	46%	75 bp	42%	4.1
H27VGAFXY_n02_zt14wtlarvs32	0.0%	43%	75 bp	36%	0.0
H27VGAFXY_n02_zt14wtlarvs33	0.0%	31%	75 bp	42%	0.0
H27VGAFXY_n02_zt14wtlarvs34	0.0%	39%	75 bp	17%	0.0
H27VGAFXY_n02_zt14wtlarvs35	59.1%	47%	75 bp	42%	4.7
H27VGAFXY_n02_zt14wtlarvs36	0.0%	39%	75 bp	58%	0.0
H27VGAFXY_n02_zt14wtlarvs37	0.0%	32%	75 bp	42%	0.0
H27VGAFXY_n02_zt14wtlarvs38	0.0%	42%	75 bp	33%	0.0
H27VGAFXY_n02_zt14wtlarvs39	57.4%	45%	75 bp	42%	3.3
H27VGAFXY_n02_zt14wtlarvs4	0.0%	33%	75 bp	50%	0.0
H27VGAFXY_n02_zt14wtlarvs41	0.6%	31%	75 bp	50%	0.0
H27VGAFXY_n02_zt14wtlarvs42	0.6%	36%	75 bp	50%	0.0
H27VGAFXY_n02_zt14wtlarvs43	0.6%	25%	75 bp	33%	0.0
H27VGAFXY_n02_zt14wtlarvs44	0.0%	33%	75 bp	58%	0.0
H27VGAFXY_n02_zt14wtlarvs45	61.1%	46%	75 bp	42%	4.2
H27VGAFXY_n02_zt14wtlarvs46	54.8%	47%	75 bp	42%	3.4
H27VGAFXY_n02_zt14wtlarvs47	0.0%	33%	75 bp	50%	0.0
H27VGAFXY_n02_zt14wtlarvs49	6.9%	32%	75 bp	50%	0.0
H27VGAFXY_n02_zt14wtlarvs5	0.0%	31%	75 bp	58%	0.0
H27VGAFXY_n02_zt14wtlarvs50	56.4%	47%	75 bp	42%	4.0
H27VGAFXY_n02_zt14wtlarvs51	67.2%	46%	75 bp	42%	5.4
H27VGAFXY_n02_zt14wtlarvs52	0.0%	35%	75 bp	42%	0.0
H27VGAFXY_n02_zt14wtlarvs53	4.6%	37%	75 bp	50%	0.0
H27VGAFXY_n02_zt14wtlarvs54	3.2%	42%	75 bp	50%	0.0
H27VGAFXY_n02_zt14wtlarvs55	1.5%	37%	75 bp	50%	0.0
H27VGAFXY_n02_zt14wtlarvs57	0.0%	40%	75 bp	50%	0.0
H27VGAFXY_n02_zt14wtlarvs58	0.0%	46%	75 bp	50%	0.0
H27VGAFXY_n02_zt14wtlarvs59	6.1%	42%	75 bp	58%	0.0
H27VGAFXY_n02_zt14wtlarvs6	5.9%	37%	75 bp	33%	0.0
H27VGAFXY_n02_zt14wtlarvs60	0.0%	36%	75 bp	50%	0.0
H27VGAFXY_n02_zt14wtlarvs61	69.6%	46%	75 bp	42%	5.2
H27VGAFXY_n02_zt14wtlarvs62	0.0%	49%	75 bp	42%	0.0
H27VGAFXY_n02_zt14wtlarvs63	0.0%	40%	75 bp	50%	0.0
H27VGAFXY_n02_zt14wtlarvs65	0.0%	29%	75 bp	42%	0.0
H27VGAFXY_n02_zt14wtlarvs66	0.0%	34%	75 bp	25%	0.0
H27VGAFXY_n02_zt14wtlarvs67	60.6%	48%	75 bp	42%	5.6
H27VGAFXY_n02_zt14wtlarvs68	0.0%	31%	75 bp	33%	0.0
H27VGAFXY_n02_zt14wtlarvs69	64.8%	47%	75 bp	42%	4.5
H27VGAFXY_n02_zt14wtlarvs7	57.9%	45%	75 bp	42%	3.0
H27VGAFXY_n02_zt14wtlarvs70	0.0%	40%	75 bp	17%	0.0
H27VGAFXY_n02_zt14wtlarvs71	0.0%	33%	75 bp	33%	0.0
H27VGAFXY_n02_zt14wtlarvs73	0.0%	34%	75 bp	42%	0.0
H27VGAFXY_n02_zt14wtlarvs74	56.3%	50%	75 bp	33%	4.3
H27VGAFXY_n02_zt14wtlarvs75	0.0%	33%	75 bp	42%	0.0
H27VGAFXY_n02_zt14wtlarvs76	0.0%	27%	75 bp	58%	0.0
H27VGAFXY_n02_zt14wtlarvs77	66.0%	45%	75 bp	42%	4.1
H27VGAFXY_n02_zt14wtlarvs78	0.0%	42%	75 bp	58%	0.0
H27VGAFXY_n02_zt14wtlarvs79	0.0%	34%	75 bp	42%	0.0
H27VGAFXY_n02_zt14wtlarvs81	54.2%	51%	75 bp	42%	4.2
H27VGAFXY_n02_zt14wtlarvs82	57.9%	51%	75 bp	42%	4.8
H27VGAFXY_n02_zt14wtlarvs83	54.2%	51%	75 bp	50%	5.2
H27VGAFXY_n02_zt14wtlarvs84	1.1%	27%	75 bp	50%	0.0
H27VGAFXY_n02_zt14wtlarvs85	67.4%	45%	75 bp	42%	3.4
H27VGAFXY_n02_zt14wtlarvs86	46.4%	47%	75 bp	33%	3.4
H27VGAFXY_n02_zt14wtlarvs87	0.0%	29%	75 bp	42%	0.0
H27VGAFXY_n02_zt14wtlarvs89	0.4%	26%	75 bp	42%	0.0
H27VGAFXY_n02_zt14wtlarvs9	53.1%	46%	75 bp	42%	2.9
H27VGAFXY_n02_zt14wtlarvs90	1.3%	28%	75 bp	50%	0.0
H27VGAFXY_n02_zt14wtlarvs91	5.9%	31%	75 bp	50%	0.0
H27VGAFXY_n02_zt14wtlarvs92	62.1%	46%	75 bp	42%	6.4
H27VGAFXY_n02_zt14wtlarvs93	6.5%	34%	75 bp	50%	0.0
H27VGAFXY_n02_zt14wtlarvs94	0.0%	33%	75 bp	50%	0.0
H27VGAFXY_n02_zt14wtlarvs95	0.0%	30%	75 bp	58%	0.0

Uncheck the tick box to hide columns. Click and drag the handle on the left to change order.

Sort	Group	Column	Description	ID	Scale
\|\|	FastQC	% Dups	% Duplicate Reads	`percent_duplicates`	None
\|\|	FastQC	% GC	Average % GC Content	`percent_gc`	None
\|\|	FastQC	Length	Average Sequence Length (bp)	`avg_sequence_length`	None
\|\|	FastQC	% Failed	Percentage of modules failed in FastQC report (includes those not plotted here)	`percent_fails`	None
\|\|	FastQC	M Seqs	Total Sequences (millions)	`total_sequences`	read_count

Run Statistics

Showing ¹/₁ rows and ⁴/₄ columns.

Number of Lanes	Total # of Single-End Reads	Total # PF Reads	Undetermined	% PhiX Aligned
4.0	161975900	139002312	7.3	1.2

Uncheck the tick box to hide columns. Click and drag the handle on the left to change order.

Sort	Column	Description	ID	Scale
\|\|	Total # of Single-End Reads	Total # of Single-End Reads	`Total # of Single-End Reads`	None
\|\|	Total # PF Reads	Total # PF Reads	`Total # PF Reads`	None
\|\|	Undetermined	Undetermined	`Undetermined`	None
\|\|	% PhiX Aligned	% PhiX Aligned	`% PhiX Aligned`	None

Demultiplexing Report

Demultiplexing Report
Total Read Count: Total number of PF (Passing Filter) reads in this library.
Portion: The proportion of reads that represent the individual library in the entire Library Pool.
Perfect: The percentage of reads in this library which have a barcode perfectly matching the barcode specified in TuboWeb. The remainder of reads have mismatches upto the max number of mismatches specified in TuboWeb (Allowed barcode mismatch option in your Library Pool).

Showing ⁹⁶/₉₆ rows and ³/₃ columns.

Library	Total Read Count	Portion (%)	Perfect (%)
zt14wtlarvs66	402.0	0.0	14.7
zt14wtlarvs71	211.0	0.0	16.0
zt14wtlarvs91	591.0	0.0	14.0
zt14wtlarvs41	167.0	0.0	12.4
zt14wtlarvs21	382.0	0.0	20.0
zt14wtlarvs77	4082925	3.2	96.3
zt14wtlarvs52	157.0	0.0	20.9
zt14wtlarvs33	168.0	0.0	18.9
zt14wtlarvs17	217.0	0.0	9.4
zt14wtlarvs54	310.0	0.0	7.0
zt14wtlarvs80	0.0	0.0	0.0
zt14wtlarvs30	4988698	3.9	96.9
zt14wtlarvs25	1500	0.0	14.5
zt14wtlarvs67	5619118	4.4	96.0
zt14wtlarvs50	3979704	3.1	96.6
zt14wtlarvs59	131.0	0.0	19.8
zt14wtlarvs13	4423568	3.4	95.7
zt14wtlarvs90	313.0	0.0	12.5
zt14wtlarvs86	3426331	2.7	97.2
zt14wtlarvs18	5584544	4.3	96.9
zt14wtlarvs12	141.0	0.0	29.4
zt14wtlarvs11	3031	0.0	8.5
zt14wtlarvs15	117.0	0.0	28.8
zt14wtlarvs20	128.0	0.0	31.9
zt14wtlarvs23	3382434	2.6	96.5
zt14wtlarvs1	39.0	0.0	12.5
zt14wtlarvs2	76.0	0.0	8.3
zt14wtlarvs74	4307154	3.3	96.5
zt14wtlarvs88	0.0	0.0	0.0
zt14wtlarvs85	3350193	2.6	96.7
zt14wtlarvs76	94.0	0.0	27.1
zt14wtlarvs79	40.0	0.0	48.1
zt14wtlarvs19	504.0	0.0	17.7
zt14wtlarvs46	3401862	2.6	96.4
zt14wtlarvs29	1918	0.0	19.9
zt14wtlarvs9	2908742	2.3	96.8
zt14wtlarvs6	17.0	0.0	37.5
zt14wtlarvs7	2968499	2.3	95.9
zt14wtlarvs34	185.0	0.0	18.4
zt14wtlarvs10	325.0	0.0	18.4
zt14wtlarvs89	252.0	0.0	12.4
zt14wtlarvs60	40.0	0.0	26.1
zt14wtlarvs55	136.0	0.0	23.0
zt14wtlarvs58	33.0	0.0	50.4
zt14wtlarvs87	253.0	0.0	18.3
zt14wtlarvs43	1952	0.0	7.0
zt14wtlarvs44	68.0	0.0	25.6
zt14wtlarvs63	27.0	0.0	48.6
zt14wtlarvs56	0.0	0.0	0.0
zt14wtlarvs92	6386592	5.0	97.2
zt14wtlarvs49	682.0	0.0	9.4
zt14wtlarvs48	0.0	0.0	0.0
zt14wtlarvs14	4936746	3.8	97.0
zt14wtlarvs31	4115469	3.2	96.3
zt14wtlarvs4	32.0	0.0	40.5
zt14wtlarvs39	3254886	2.5	95.6
zt14wtlarvs27	6682073	5.2	96.5
zt14wtlarvs38	124.0	0.0	27.4
zt14wtlarvs16	0.0	0.0	0.0
zt14wtlarvs26	5475427	4.2	96.8
zt14wtlarvs75	257.0	0.0	29.8
zt14wtlarvs3	171.0	0.0	16.8
zt14wtlarvs84	343.0	0.0	19.4
zt14wtlarvs78	56.0	0.0	37.1
zt14wtlarvs35	4737297	3.7	96.1
zt14wtlarvs82	4765514	3.7	96.2
zt14wtlarvs57	34.0	0.0	14.0
zt14wtlarvs53	546.0	0.0	19.8
zt14wtlarvs96	0.0	0.0	0.0
zt14wtlarvs70	149.0	0.0	32.5
zt14wtlarvs51	5432441	4.2	95.6
zt14wtlarvs93	681.0	0.0	19.2
zt14wtlarvs73	119.0	0.0	10.7
zt14wtlarvs72	0.0	0.0	0.0
zt14wtlarvs5	97.0	0.0	21.4
zt14wtlarvs81	4209302	3.3	95.5
zt14wtlarvs32	3.0	0.0	0.0
zt14wtlarvs22	79.0	0.0	41.8
zt14wtlarvs8	0.0	0.0	0.0
zt14wtlarvs62	13.0	0.0	66.7
zt14wtlarvs37	300.0	0.0	42.1
zt14wtlarvs64	0.0	0.0	0.0
zt14wtlarvs69	4529639	3.5	96.0
zt14wtlarvs68	433.0	0.0	8.3
zt14wtlarvs28	7245806	5.6	96.7
zt14wtlarvs40	0.0	0.0	0.0
zt14wtlarvs47	63.0	0.0	32.9
zt14wtlarvs45	4228835	3.3	95.9
zt14wtlarvs94	45.0	0.0	37.5
zt14wtlarvs65	199.0	0.0	19.3
zt14wtlarvs61	5244773	4.1	95.4
zt14wtlarvs42	173.0	0.0	33.2
zt14wtlarvs83	5215985	4.0	94.7
zt14wtlarvs95	79.0	0.0	33.7
zt14wtlarvs24	1.0	0.0	0.0
zt14wtlarvs36	73.0	0.0	33.8

Uncheck the tick box to hide columns. Click and drag the handle on the left to change order.

Sort	Column	Description	ID	Scale
\|\|	Total Read Count	Total Read Count	`Total Read Count`	None
\|\|	Portion (%)	Portion (%)	`Portion (%)`	None
\|\|	Perfect (%)	Perfect (%)	`Perfect (%)`	None

FastQC

FastQC is a quality control tool for high throughput sequence data, written by Simon Andrews at the Babraham Institute in Cambridge.

Sequence Quality Histograms

The mean quality value across each base position in the read. See the FastQC help.

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

Per Sequence Quality Scores

The number of reads with average quality scores. Shows if a subset of reads has poor quality. See the FastQC help.

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

Per Base Sequence Content

The proportion of each base position for which each of the four normal DNA bases has been called. See the FastQC help.

Click a heatmap row to see a line plot for that dataset.

rollover for sample name

Position: -

%T: -

%C: -

%A: -

%G: -

Per Sequence GC Content

The average GC content of reads. Normal random library typically have a roughly normal distribution of GC content. See the FastQC help.

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

Per Base N Content

The percentage of base calls at each position for which an N was called. See the FastQC help.

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

Sequence Length Distribution

All samples have sequences of a single length (75bp).

Sequence Duplication Levels

The relative level of duplication found for every sequence. See the FastQC help.

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

Overrepresented sequences

The total amount of overrepresented sequences found in each library. See the FastQC help for further information.

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

Adapter Content

The cumulative percentage count of the proportion of your library which has seen each of the adapter sequences at each position. See the FastQC help. Only samples with ≥ 0.1% adapter contamination are shown.

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

Toggle navigation v1.0.dev0

MultiQC Toolbox

Apply Highlight Samples

Apply Rename Samples

Apply Show / Hide Samples

Export Plots

Choose Plots

Save Settings

Load Settings

About MultiQC

General Statistics

General Statistics: Columns

Run Statistics

Table Fqtz: Columns

Demultiplexing Report

Table Oyqu: Columns

FastQC

Sequence Quality Histograms

Per Sequence Quality Scores

Per Base Sequence Content

rollover for sample name

Per Sequence GC Content

Per Base N Content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

v1.0.dev0

Highlight Samples

Rename Samples

Show / Hide Samples