FastQCFastQC Report
Thu 14 Mar 2024
H27HKDRX5_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH27HKDRX5_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1009129734
Sequences flagged as poor quality0
Sequence length10
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACGGTGAAT27744271827.493265598296208No Hit
ACAGTAACTA26764965626.522819314726487No Hit
TCTACCATTT25782826825.54956605807435No Hit
CACCGCACCA15964046415.819617500241053No Hit
GGGGGGGGGG227472972.254149910917202No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)