[2021-03-05 17:17:11,099] multiqc [DEBUG ] No MultiQC config found: /share/apps/multiqc/1.9/lib/python3.8/site-packages/multiqc_config.yaml [2021-03-05 17:17:11,099] multiqc [DEBUG ] No MultiQC config found: /home/gencore/.multiqc_config.yaml [2021-03-05 17:17:11,099] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2021-03-05 17:17:11,100] multiqc [DEBUG ] Loading config settings from: /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml [2021-03-05 17:17:11,100] multiqc [DEBUG ] New config 'report_section_order': {'demux_report': {'after': 'run_stats'}} [2021-03-05 17:17:11,100] multiqc [DEBUG ] Command used: /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/H273YDRXY/2 [2021-03-05 17:17:12,384] multiqc [DEBUG ] Latest MultiQC version is v1.9 [2021-03-05 17:17:12,384] multiqc [INFO ] This is MultiQC v1.9 [2021-03-05 17:17:12,384] multiqc [DEBUG ] Command : /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/H273YDRXY/2 [2021-03-05 17:17:12,384] multiqc [DEBUG ] Working dir : /scratch/gencore/logs/html/H273YDRXY/2 [2021-03-05 17:17:12,384] multiqc [INFO ] Template : default [2021-03-05 17:17:12,384] multiqc [DEBUG ] Running Python 3.8.6 (default, Oct 11 2020, 20:34:31) [GCC Intel(R) C++ gcc 8.3.1 mode] [2021-03-05 17:17:12,384] multiqc [INFO ] Searching : /scratch/gencore/logs/html/H273YDRXY/2 [2021-03-05 17:17:12,385] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, interop, ivar, flash, seqyclean [2021-03-05 17:17:12,385] multiqc [DEBUG ] Using temporary directory for creating report: /state/partition1/job-3382663/tmp3l2az2oo [2021-03-05 17:17:12,497] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H273YDRXY_l02_n01_Fluc_bc_B03_T4_fastqc.html [2021-03-05 17:17:12,500] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H273YDRXY_l02_n01_Fluc_bc_B03_T4_fastqc.html [2021-03-05 17:17:12,601] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H273YDRXY_l02_n01_Fluc_bc_H09_T0_fastqc.html [2021-03-05 17:17:12,603] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H273YDRXY_l02_n01_Fluc_bc_H09_T0_fastqc.html [2021-03-05 17:17:12,694] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H273YDRXY_l02_n01_Fluc_bc_A10_T0_fastqc.html [2021-03-05 17:17:12,696] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H273YDRXY_l02_n01_Fluc_bc_A10_T0_fastqc.html [2021-03-05 17:17:12,787] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H273YDRXY_l02_n02_Fluc_bc_A10_T0_fastqc.html [2021-03-05 17:17:12,789] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H273YDRXY_l02_n02_Fluc_bc_A10_T0_fastqc.html [2021-03-05 17:17:12,864] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H273YDRXY_l02_n01_Fluc_bc_B09_T0_fastqc.html [2021-03-05 17:17:12,866] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H273YDRXY_l02_n01_Fluc_bc_B09_T0_fastqc.html [2021-03-05 17:17:12,978] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H273YDRXY_l02_n01_Fluc_bc_D09_T0_fastqc.html [2021-03-05 17:17:12,980] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H273YDRXY_l02_n01_Fluc_bc_D09_T0_fastqc.html [2021-03-05 17:17:13,060] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H273YDRXY_l02_n01_Fluc_bc_F09_T0_fastqc.html [2021-03-05 17:17:13,062] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H273YDRXY_l02_n01_Fluc_bc_F09_T0_fastqc.html [2021-03-05 17:17:13,149] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H273YDRXY_l02_n01_undetermined_fastqc.html [2021-03-05 17:17:13,151] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H273YDRXY_l02_n01_undetermined_fastqc.html [2021-03-05 17:17:13,233] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H273YDRXY_l02_n01_Fluc_bc_C10_T0_fastqc.html [2021-03-05 17:17:13,235] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H273YDRXY_l02_n01_Fluc_bc_C10_T0_fastqc.html [2021-03-05 17:17:13,330] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H273YDRXY_l02_n02_Fluc_bc_H09_T0_fastqc.html [2021-03-05 17:17:13,332] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H273YDRXY_l02_n02_Fluc_bc_H09_T0_fastqc.html [2021-03-05 17:17:13,332] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: H273YDRXY_l02_n02_Fluc_bc_H09_T0_fastqc.html [2021-03-05 17:17:13,332] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: H273YDRXY_l02_n02_Fluc_bc_H09_T0_fastqc.html [2021-03-05 17:17:13,332] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: H273YDRXY_l02_n02_Fluc_bc_H09_T0_fastqc.html [2021-03-05 17:17:13,332] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: H273YDRXY_l02_n02_Fluc_bc_H09_T0_fastqc.html [2021-03-05 17:17:13,332] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: H273YDRXY_l02_n02_Fluc_bc_H09_T0_fastqc.html [2021-03-05 17:17:13,430] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H273YDRXY_l02_n02_Fluc_bc_B03_T4_fastqc.html [2021-03-05 17:17:13,432] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H273YDRXY_l02_n02_Fluc_bc_B03_T4_fastqc.html [2021-03-05 17:17:13,432] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: H273YDRXY_l02_n02_Fluc_bc_B03_T4_fastqc.html [2021-03-05 17:17:13,432] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: H273YDRXY_l02_n02_Fluc_bc_B03_T4_fastqc.html [2021-03-05 17:17:13,432] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: H273YDRXY_l02_n02_Fluc_bc_B03_T4_fastqc.html [2021-03-05 17:17:13,432] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: H273YDRXY_l02_n02_Fluc_bc_B03_T4_fastqc.html [2021-03-05 17:17:13,432] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: H273YDRXY_l02_n02_Fluc_bc_B03_T4_fastqc.html [2021-03-05 17:17:13,514] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H273YDRXY_l02_n02_Fluc_bc_E10_T0_fastqc.html [2021-03-05 17:17:13,516] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H273YDRXY_l02_n02_Fluc_bc_E10_T0_fastqc.html [2021-03-05 17:17:13,609] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H273YDRXY_l02_n02_Fluc_bc_B09_T0_fastqc.html [2021-03-05 17:17:13,611] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H273YDRXY_l02_n02_Fluc_bc_B09_T0_fastqc.html [2021-03-05 17:17:13,611] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: H273YDRXY_l02_n02_Fluc_bc_B09_T0_fastqc.html [2021-03-05 17:17:13,611] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: H273YDRXY_l02_n02_Fluc_bc_B09_T0_fastqc.html [2021-03-05 17:17:13,612] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: H273YDRXY_l02_n02_Fluc_bc_B09_T0_fastqc.html [2021-03-05 17:17:13,612] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: H273YDRXY_l02_n02_Fluc_bc_B09_T0_fastqc.html [2021-03-05 17:17:13,612] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: H273YDRXY_l02_n02_Fluc_bc_B09_T0_fastqc.html [2021-03-05 17:17:13,698] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H273YDRXY_l02_n01_Fluc_bc_E10_T0_fastqc.html [2021-03-05 17:17:13,700] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H273YDRXY_l02_n01_Fluc_bc_E10_T0_fastqc.html [2021-03-05 17:17:13,792] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H273YDRXY_l02_n02_Fluc_bc_G10_T0_fastqc.html [2021-03-05 17:17:13,794] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H273YDRXY_l02_n02_Fluc_bc_G10_T0_fastqc.html [2021-03-05 17:17:13,885] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H273YDRXY_l02_n02_Fluc_bc_C10_T0_fastqc.html [2021-03-05 17:17:13,886] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H273YDRXY_l02_n02_Fluc_bc_C10_T0_fastqc.html [2021-03-05 17:17:13,979] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H273YDRXY_l02_n01_Fluc_bc_2546_fastqc.html [2021-03-05 17:17:13,981] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H273YDRXY_l02_n01_Fluc_bc_2546_fastqc.html [2021-03-05 17:17:13,982] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: H273YDRXY_l02_n01_Fluc_bc_2546_fastqc.html [2021-03-05 17:17:13,982] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: H273YDRXY_l02_n01_Fluc_bc_2546_fastqc.html [2021-03-05 17:17:13,982] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: H273YDRXY_l02_n01_Fluc_bc_2546_fastqc.html [2021-03-05 17:17:13,982] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: H273YDRXY_l02_n01_Fluc_bc_2546_fastqc.html [2021-03-05 17:17:13,982] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: H273YDRXY_l02_n01_Fluc_bc_2546_fastqc.html [2021-03-05 17:17:14,076] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H273YDRXY_l02_n02_Fluc_bc_D09_T0_fastqc.html [2021-03-05 17:17:14,078] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H273YDRXY_l02_n02_Fluc_bc_D09_T0_fastqc.html [2021-03-05 17:17:14,172] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H273YDRXY_l02_n01_Fluc_bc_D03_T4_fastqc.html [2021-03-05 17:17:14,174] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H273YDRXY_l02_n01_Fluc_bc_D03_T4_fastqc.html [2021-03-05 17:17:14,255] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H273YDRXY_l02_n02_Fluc_bc_2543_fastqc.html [2021-03-05 17:17:14,257] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H273YDRXY_l02_n02_Fluc_bc_2543_fastqc.html [2021-03-05 17:17:14,366] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H273YDRXY_l02_n02_Fluc_bc_D03_T4_fastqc.html [2021-03-05 17:17:14,368] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H273YDRXY_l02_n02_Fluc_bc_D03_T4_fastqc.html [2021-03-05 17:17:14,459] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H273YDRXY_l02_n02_Fluc_bc_2546_fastqc.html [2021-03-05 17:17:14,461] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H273YDRXY_l02_n02_Fluc_bc_2546_fastqc.html [2021-03-05 17:17:14,461] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: H273YDRXY_l02_n02_Fluc_bc_2546_fastqc.html [2021-03-05 17:17:14,461] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: H273YDRXY_l02_n02_Fluc_bc_2546_fastqc.html [2021-03-05 17:17:14,461] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: H273YDRXY_l02_n02_Fluc_bc_2546_fastqc.html [2021-03-05 17:17:14,461] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: H273YDRXY_l02_n02_Fluc_bc_2546_fastqc.html [2021-03-05 17:17:14,461] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: H273YDRXY_l02_n02_Fluc_bc_2546_fastqc.html [2021-03-05 17:17:14,566] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H273YDRXY_l02_n01_Fluc_bc_G10_T0_fastqc.html [2021-03-05 17:17:14,568] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H273YDRXY_l02_n01_Fluc_bc_G10_T0_fastqc.html [2021-03-05 17:17:14,658] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H273YDRXY_l02_n01_Fluc_bc_2543_fastqc.html [2021-03-05 17:17:14,660] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H273YDRXY_l02_n01_Fluc_bc_2543_fastqc.html [2021-03-05 17:17:14,754] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H273YDRXY_l02_n02_Fluc_bc_F09_T0_fastqc.html [2021-03-05 17:17:14,756] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H273YDRXY_l02_n02_Fluc_bc_F09_T0_fastqc.html [2021-03-05 17:17:14,841] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H273YDRXY_l02_n02_undetermined_fastqc.html [2021-03-05 17:17:14,843] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H273YDRXY_l02_n02_undetermined_fastqc.html [2021-03-05 17:17:15,164] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.3.2 [2021-03-05 17:17:15,165] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.3.2 [2021-03-05 17:17:15,173] multiqc.modules.custom_content.custom_content [INFO ] run_stats: Found 1 samples (table) [2021-03-05 17:17:15,179] multiqc.modules.custom_content.custom_content [INFO ] demux_report-2: Found 13 samples (table) [2021-03-05 17:17:15,189] multiqc.modules.custom_content.custom_content [INFO ] undetermined_barcodes: Found 20 samples (table) [2021-03-05 17:17:15,192] multiqc [DEBUG ] No samples found: conpair [2021-03-05 17:17:15,195] multiqc [DEBUG ] No samples found: peddy [2021-03-05 17:17:15,198] multiqc [DEBUG ] No samples found: somalier [2021-03-05 17:17:15,201] multiqc [DEBUG ] No samples found: methylQA [2021-03-05 17:17:15,205] multiqc [DEBUG ] No samples found: mosdepth [2021-03-05 17:17:15,207] multiqc [DEBUG ] No samples found: phantompeakqualtools [2021-03-05 17:17:15,210] multiqc [DEBUG ] No samples found: qualimap [2021-03-05 17:17:15,213] multiqc [DEBUG ] No samples found: preseq [2021-03-05 17:17:15,215] multiqc [DEBUG ] No samples found: quast [2021-03-05 17:17:15,218] multiqc [DEBUG ] No samples found: qorts [2021-03-05 17:17:15,221] multiqc [DEBUG ] No samples found: rna_seqc [2021-03-05 17:17:15,223] multiqc [DEBUG ] No samples found: rockhopper [2021-03-05 17:17:15,226] multiqc [DEBUG ] No samples found: rsem [2021-03-05 17:17:15,231] multiqc [DEBUG ] No samples found: rseqc [2021-03-05 17:17:15,233] multiqc [DEBUG ] No samples found: busco [2021-03-05 17:17:15,236] multiqc [DEBUG ] No samples found: goleft_indexcov [2021-03-05 17:17:15,239] multiqc [DEBUG ] No samples found: disambiguate [2021-03-05 17:17:15,242] multiqc [DEBUG ] No samples found: supernova [2021-03-05 17:17:15,246] multiqc [DEBUG ] No samples found: deeptools [2021-03-05 17:17:15,249] multiqc [DEBUG ] No samples found: sargasso [2021-03-05 17:17:15,252] multiqc [DEBUG ] No samples found: verifybamid [2021-03-05 17:17:15,254] multiqc [DEBUG ] No samples found: mirtrace [2021-03-05 17:17:15,257] multiqc [DEBUG ] No samples found: happy [2021-03-05 17:17:15,260] multiqc [DEBUG ] No samples found: mirtop [2021-03-05 17:17:15,263] multiqc [DEBUG ] No samples found: homer [2021-03-05 17:17:15,266] multiqc [DEBUG ] No samples found: macs2 [2021-03-05 17:17:15,268] multiqc [DEBUG ] No samples found: theta2 [2021-03-05 17:17:15,271] multiqc [DEBUG ] No samples found: snpeff [2021-03-05 17:17:15,274] multiqc [DEBUG ] No samples found: gatk [2021-03-05 17:17:15,277] multiqc [DEBUG ] No samples found: htseq [2021-03-05 17:17:15,280] multiqc [DEBUG ] No samples found: bcftools [2021-03-05 17:17:15,282] multiqc [DEBUG ] No samples found: featureCounts [2021-03-05 17:17:15,286] multiqc [DEBUG ] No samples found: fgbio [2021-03-05 17:17:15,291] multiqc [DEBUG ] No samples found: dragen [2021-03-05 17:17:15,293] multiqc [DEBUG ] No samples found: dedup [2021-03-05 17:17:15,296] multiqc [DEBUG ] No samples found: damageprofiler [2021-03-05 17:17:15,303] multiqc [DEBUG ] No samples found: biobambam2 [2021-03-05 17:17:15,306] multiqc [DEBUG ] No samples found: mtnucratio [2021-03-05 17:17:15,308] multiqc [DEBUG ] No samples found: picard [2021-03-05 17:17:15,311] multiqc [DEBUG ] No samples found: prokka [2021-03-05 17:17:15,314] multiqc [DEBUG ] No samples found: samblaster [2021-03-05 17:17:15,317] multiqc [DEBUG ] No samples found: samtools [2021-03-05 17:17:15,320] multiqc [DEBUG ] No samples found: sexdeterrmine [2021-03-05 17:17:15,323] multiqc [DEBUG ] No samples found: bamtools [2021-03-05 17:17:15,326] multiqc [DEBUG ] No samples found: jellyfish [2021-03-05 17:17:15,329] multiqc [DEBUG ] No samples found: vcftools [2021-03-05 17:17:15,332] multiqc [DEBUG ] No samples found: longranger [2021-03-05 17:17:15,335] multiqc [DEBUG ] No samples found: stacks [2021-03-05 17:17:15,337] multiqc [DEBUG ] No samples found: varscan2 [2021-03-05 17:17:15,342] multiqc [DEBUG ] No samples found: bbmap [2021-03-05 17:17:15,345] multiqc [DEBUG ] No samples found: bismark [2021-03-05 17:17:15,348] multiqc [DEBUG ] No samples found: biscuit [2021-03-05 17:17:15,351] multiqc [DEBUG ] No samples found: hicexplorer [2021-03-05 17:17:15,353] multiqc [DEBUG ] No samples found: hicup [2021-03-05 17:17:15,356] multiqc [DEBUG ] No samples found: hicpro [2021-03-05 17:17:15,359] multiqc [DEBUG ] No samples found: salmon [2021-03-05 17:17:15,361] multiqc [DEBUG ] No samples found: kallisto [2021-03-05 17:17:15,364] multiqc [DEBUG ] No samples found: slamdunk [2021-03-05 17:17:15,367] multiqc [DEBUG ] No samples found: star [2021-03-05 17:17:15,370] multiqc [DEBUG ] No samples found: hisat2 [2021-03-05 17:17:15,372] multiqc [DEBUG ] No samples found: tophat [2021-03-05 17:17:15,375] multiqc [DEBUG ] No samples found: bowtie2 [2021-03-05 17:17:15,378] multiqc [DEBUG ] No samples found: bowtie1 [2021-03-05 17:17:15,380] multiqc [DEBUG ] No samples found: snpsplit [2021-03-05 17:17:15,383] multiqc [DEBUG ] No samples found: kat [2021-03-05 17:17:15,386] multiqc [DEBUG ] No samples found: leehom [2021-03-05 17:17:15,388] multiqc [DEBUG ] No samples found: adapterRemoval [2021-03-05 17:17:15,391] multiqc [DEBUG ] No samples found: clipandmerge [2021-03-05 17:17:15,394] multiqc [DEBUG ] No samples found: cutadapt [2021-03-05 17:17:15,396] multiqc [DEBUG ] No samples found: flexbar [2021-03-05 17:17:15,399] multiqc [DEBUG ] No samples found: kaiju [2021-03-05 17:17:15,402] multiqc [DEBUG ] No samples found: kraken [2021-03-05 17:17:15,404] multiqc [DEBUG ] No samples found: malt [2021-03-05 17:17:15,407] multiqc [DEBUG ] No samples found: trimmomatic [2021-03-05 17:17:15,410] multiqc [DEBUG ] No samples found: sickle [2021-03-05 17:17:15,412] multiqc [DEBUG ] No samples found: skewer [2021-03-05 17:17:15,415] multiqc [DEBUG ] No samples found: sortmerna [2021-03-05 17:17:15,418] multiqc [DEBUG ] No samples found: biobloomtools [2021-03-05 17:17:15,420] multiqc [DEBUG ] No samples found: fastq_screen [2021-03-05 17:17:15,423] multiqc [DEBUG ] No samples found: afterqc [2021-03-05 17:17:15,426] multiqc [DEBUG ] No samples found: fastp [2021-03-05 17:17:16,971] multiqc.modules.fastqc.fastqc [INFO ] Found 26 reports [2021-03-05 17:17:17,344] multiqc [DEBUG ] No samples found: pycoqc [2021-03-05 17:17:17,347] multiqc [DEBUG ] No samples found: minionqc [2021-03-05 17:17:17,351] multiqc [DEBUG ] No samples found: multivcfanalyzer [2021-03-05 17:17:17,354] multiqc [DEBUG ] No samples found: clusterflow [2021-03-05 17:17:17,356] multiqc [DEBUG ] No samples found: bcl2fastq [2021-03-05 17:17:17,359] multiqc [DEBUG ] No samples found: interop [2021-03-05 17:17:17,362] multiqc [DEBUG ] No samples found: ivar [2021-03-05 17:17:17,364] multiqc [DEBUG ] No samples found: flash [2021-03-05 17:17:17,367] multiqc [DEBUG ] No samples found: seqyclean [2021-03-05 17:17:17,367] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found. [2021-03-05 17:17:17,367] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Lane Statistics'. [2021-03-05 17:17:17,367] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Lane 2 Demultiplexing Report'. [2021-03-05 17:17:17,367] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module ' Barcodes of Undetermined Reads'. [2021-03-05 17:17:17,367] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'FastQC'. [2021-03-05 17:17:17,399] multiqc [INFO ] Compressing plot data [2021-03-05 17:17:17,828] multiqc [INFO ] Report : multiqc_report.html [2021-03-05 17:17:17,829] multiqc [INFO ] Data : multiqc_data [2021-03-05 17:17:17,829] multiqc [DEBUG ] Moving data file from '/state/partition1/job-3382663/tmp3l2az2oo/multiqc_data' to '/scratch/gencore/logs/html/H273YDRXY/2/multiqc_data' [2021-03-05 17:17:17,924] multiqc [INFO ] MultiQC complete