[2024-10-31 20:00:19,332] multiqc [DEBUG ] No MultiQC config found: /share/apps/multiqc/1.9/lib/python3.8/site-packages/multiqc_config.yaml [2024-10-31 20:00:19,332] multiqc [DEBUG ] No MultiQC config found: /home/gencore/.multiqc_config.yaml [2024-10-31 20:00:19,332] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2024-10-31 20:00:19,335] multiqc [DEBUG ] Loading config settings from: /home/gencore/SCRIPTS/GENEFLOW/bin/mqc_config.yaml [2024-10-31 20:00:19,335] multiqc [DEBUG ] New config 'report_section_order': {'general_stats': {'order': 1000}, 'demux_report': {'order': 900}, 'demux_report-1': {'order': 900}, 'demux_report-2': {'order': 900}, 'undetermined_barcodes': {'order': 800}, 'run_stats': {'order': 700}, 'fastqc': {'order': 500}} [2024-10-31 20:00:19,335] multiqc [DEBUG ] Command used: /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/GENEFLOW/bin/mqc_config.yaml . [2024-10-31 20:00:19,383] multiqc [DEBUG ] Could not connect to multiqc.info for version check: [2024-10-31 20:00:19,383] multiqc [INFO ] This is MultiQC v1.9 [2024-10-31 20:00:19,383] multiqc [DEBUG ] Command : /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/GENEFLOW/bin/mqc_config.yaml . [2024-10-31 20:00:19,383] multiqc [DEBUG ] Working dir : /scratch/gencore/GENEFLOW/work/nf/ec/f5fd06298572f5d1ca9d476c71f28f/merged [2024-10-31 20:00:19,383] multiqc [INFO ] Template : default [2024-10-31 20:00:19,383] multiqc [DEBUG ] Running Python 3.8.6 (default, Oct 11 2020, 20:34:31) [GCC Intel(R) C++ gcc 8.3.1 mode] [2024-10-31 20:00:19,383] multiqc [INFO ] Searching : /scratch/gencore/GENEFLOW/work/nf/ec/f5fd06298572f5d1ca9d476c71f28f/merged [2024-10-31 20:00:19,383] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, interop, ivar, flash, seqyclean [2024-10-31 20:00:19,383] multiqc [DEBUG ] Using temporary directory for creating report: /state/partition1/job-52885755/tmpwvbc27n8 [2024-10-31 20:00:19,507] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H23Y2DMX2_n01_CITE-seq_test_BCells_PI1_fastqc.html [2024-10-31 20:00:19,510] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H23Y2DMX2_n01_CITE-seq_test_BCells_PI1_fastqc.html [2024-10-31 20:00:19,566] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H23Y2DMX2_n01_CITE-seq_test_TCells_C2_fastqc.html [2024-10-31 20:00:19,567] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H23Y2DMX2_n01_CITE-seq_test_TCells_C2_fastqc.html [2024-10-31 20:00:19,613] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H23Y2DMX2_n01_CITE-seq_test_TCells_PI3_fastqc.html [2024-10-31 20:00:19,615] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H23Y2DMX2_n01_CITE-seq_test_TCells_PI3_fastqc.html [2024-10-31 20:00:19,660] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H23Y2DMX2_n01_undetermined_fastqc.html [2024-10-31 20:00:19,662] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H23Y2DMX2_n01_undetermined_fastqc.html [2024-10-31 20:00:19,705] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H23Y2DMX2_n02_CITE-seq_test_TCells_C1_fastqc.html [2024-10-31 20:00:19,707] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H23Y2DMX2_n02_CITE-seq_test_TCells_C1_fastqc.html [2024-10-31 20:00:19,756] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H23Y2DMX2_n01_CITE-seq_test_BCells_PI3_fastqc.html [2024-10-31 20:00:19,757] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H23Y2DMX2_n01_CITE-seq_test_BCells_PI3_fastqc.html [2024-10-31 20:00:19,802] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H23Y2DMX2_n01_CITE-seq_test_GEX_PI2_fastqc.html [2024-10-31 20:00:19,804] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H23Y2DMX2_n01_CITE-seq_test_GEX_PI2_fastqc.html [2024-10-31 20:00:19,849] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H23Y2DMX2_n01_CITE-seq_test_TCells_GD3_fastqc.html [2024-10-31 20:00:19,851] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H23Y2DMX2_n01_CITE-seq_test_TCells_GD3_fastqc.html [2024-10-31 20:00:19,897] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H23Y2DMX2_n02_CITE-seq_test_BCells_GD3_fastqc.html [2024-10-31 20:00:19,899] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H23Y2DMX2_n02_CITE-seq_test_BCells_GD3_fastqc.html [2024-10-31 20:00:19,954] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H23Y2DMX2_n02_CITE-seq_test_BCells_GD1_fastqc.html [2024-10-31 20:00:19,956] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H23Y2DMX2_n02_CITE-seq_test_BCells_GD1_fastqc.html [2024-10-31 20:00:20,011] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H23Y2DMX2_n02_CITE-seq_test_BCells_PI2_fastqc.html [2024-10-31 20:00:20,013] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H23Y2DMX2_n02_CITE-seq_test_BCells_PI2_fastqc.html [2024-10-31 20:00:20,068] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H23Y2DMX2_n02_CITE-seq_test_TCells_GD3_fastqc.html [2024-10-31 20:00:20,070] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H23Y2DMX2_n02_CITE-seq_test_TCells_GD3_fastqc.html [2024-10-31 20:00:20,118] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H23Y2DMX2_n02_CITE-seq_test_BCells_C2_fastqc.html [2024-10-31 20:00:20,120] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H23Y2DMX2_n02_CITE-seq_test_BCells_C2_fastqc.html [2024-10-31 20:00:20,170] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H23Y2DMX2_n01_CITE-seq_test_GEX_GD2_fastqc.html [2024-10-31 20:00:20,171] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H23Y2DMX2_n01_CITE-seq_test_GEX_GD2_fastqc.html [2024-10-31 20:00:20,216] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H23Y2DMX2_n02_CITE-seq_test_GEX_C1_fastqc.html [2024-10-31 20:00:20,217] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H23Y2DMX2_n02_CITE-seq_test_GEX_C1_fastqc.html [2024-10-31 20:00:20,265] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H23Y2DMX2_n02_CITE-seq_test_TCells_PI2_fastqc.html [2024-10-31 20:00:20,267] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H23Y2DMX2_n02_CITE-seq_test_TCells_PI2_fastqc.html [2024-10-31 20:00:20,315] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H23Y2DMX2_n02_CITE-seq_test_BCells_PI1_fastqc.html [2024-10-31 20:00:20,317] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H23Y2DMX2_n02_CITE-seq_test_BCells_PI1_fastqc.html [2024-10-31 20:00:20,373] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H23Y2DMX2_n01_CITE-seq_test_GEX_PI1_fastqc.html [2024-10-31 20:00:20,374] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H23Y2DMX2_n01_CITE-seq_test_GEX_PI1_fastqc.html [2024-10-31 20:00:20,419] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H23Y2DMX2_n02_CITE-seq_test_TCells_GD2_fastqc.html [2024-10-31 20:00:20,420] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H23Y2DMX2_n02_CITE-seq_test_TCells_GD2_fastqc.html [2024-10-31 20:00:20,469] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H23Y2DMX2_n01_CITE-seq_test_BCells_C2_fastqc.html [2024-10-31 20:00:20,471] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H23Y2DMX2_n01_CITE-seq_test_BCells_C2_fastqc.html [2024-10-31 20:00:20,515] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H23Y2DMX2_n02_CITE-seq_test_TCells_GD1_fastqc.html [2024-10-31 20:00:20,517] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H23Y2DMX2_n02_CITE-seq_test_TCells_GD1_fastqc.html [2024-10-31 20:00:20,565] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H23Y2DMX2_n01_CITE-seq_test_GEX_C1_fastqc.html [2024-10-31 20:00:20,566] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H23Y2DMX2_n01_CITE-seq_test_GEX_C1_fastqc.html [2024-10-31 20:00:20,610] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H23Y2DMX2_n02_CITE-seq_test_GEX_PI2_fastqc.html [2024-10-31 20:00:20,611] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H23Y2DMX2_n02_CITE-seq_test_GEX_PI2_fastqc.html [2024-10-31 20:00:20,659] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H23Y2DMX2_n02_CITE-seq_test_TCells_PI3_fastqc.html [2024-10-31 20:00:20,661] multiqc [DEBUG ] File ignored by 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20:00:20,808] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H23Y2DMX2_n02_CITE-seq_test_GEX_GD3_fastqc.html [2024-10-31 20:00:20,855] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H23Y2DMX2_n01_CITE-seq_test_TCells_GD1_fastqc.html [2024-10-31 20:00:20,857] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H23Y2DMX2_n01_CITE-seq_test_TCells_GD1_fastqc.html [2024-10-31 20:00:20,903] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H23Y2DMX2_n01_CITE-seq_test_GEX_GD3_fastqc.html [2024-10-31 20:00:20,904] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H23Y2DMX2_n01_CITE-seq_test_GEX_GD3_fastqc.html [2024-10-31 20:00:20,948] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H23Y2DMX2_n02_CITE-seq_test_TCells_C2_fastqc.html [2024-10-31 20:00:20,950] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H23Y2DMX2_n02_CITE-seq_test_TCells_C2_fastqc.html [2024-10-31 20:00:20,995] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H23Y2DMX2_n02_CITE-seq_test_GEX_C2_fastqc.html [2024-10-31 20:00:20,996] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H23Y2DMX2_n02_CITE-seq_test_GEX_C2_fastqc.html [2024-10-31 20:00:21,043] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H23Y2DMX2_n02_CITE-seq_test_BCells_PI3_fastqc.html [2024-10-31 20:00:21,044] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H23Y2DMX2_n02_CITE-seq_test_BCells_PI3_fastqc.html [2024-10-31 20:00:21,100] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H23Y2DMX2_n01_CITE-seq_test_BCells_PI2_fastqc.html [2024-10-31 20:00:21,102] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H23Y2DMX2_n01_CITE-seq_test_BCells_PI2_fastqc.html [2024-10-31 20:00:21,145] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H23Y2DMX2_n01_CITE-seq_test_BCells_GD2_fastqc.html [2024-10-31 20:00:21,147] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H23Y2DMX2_n01_CITE-seq_test_BCells_GD2_fastqc.html [2024-10-31 20:00:21,192] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H23Y2DMX2_n01_CITE-seq_test_GEX_C2_fastqc.html [2024-10-31 20:00:21,194] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H23Y2DMX2_n01_CITE-seq_test_GEX_C2_fastqc.html [2024-10-31 20:00:21,236] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H23Y2DMX2_n01_CITE-seq_test_GEX_GD1_fastqc.html [2024-10-31 20:00:21,238] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H23Y2DMX2_n01_CITE-seq_test_GEX_GD1_fastqc.html [2024-10-31 20:00:21,281] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H23Y2DMX2_n02_CITE-seq_test_GEX_PI3_fastqc.html [2024-10-31 20:00:21,283] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H23Y2DMX2_n02_CITE-seq_test_GEX_PI3_fastqc.html [2024-10-31 20:00:21,331] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H23Y2DMX2_n01_CITE-seq_test_TCells_PI2_fastqc.html [2024-10-31 20:00:21,333] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H23Y2DMX2_n01_CITE-seq_test_TCells_PI2_fastqc.html [2024-10-31 20:00:21,382] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H23Y2DMX2_n01_CITE-seq_test_BCells_GD3_fastqc.html [2024-10-31 20:00:21,384] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H23Y2DMX2_n01_CITE-seq_test_BCells_GD3_fastqc.html [2024-10-31 20:00:21,428] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H23Y2DMX2_n02_CITE-seq_test_GEX_GD2_fastqc.html [2024-10-31 20:00:21,430] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H23Y2DMX2_n02_CITE-seq_test_GEX_GD2_fastqc.html [2024-10-31 20:00:21,489] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H23Y2DMX2_n01_CITE-seq_test_BCells_C1_fastqc.html [2024-10-31 20:00:21,491] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H23Y2DMX2_n01_CITE-seq_test_BCells_C1_fastqc.html [2024-10-31 20:00:21,535] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H23Y2DMX2_n01_CITE-seq_test_TCells_PI1_fastqc.html [2024-10-31 20:00:21,536] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H23Y2DMX2_n01_CITE-seq_test_TCells_PI1_fastqc.html [2024-10-31 20:00:21,593] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H23Y2DMX2_n02_CITE-seq_test_BCells_C1_fastqc.html [2024-10-31 20:00:21,594] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H23Y2DMX2_n02_CITE-seq_test_BCells_C1_fastqc.html [2024-10-31 20:00:21,649] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H23Y2DMX2_n01_CITE-seq_test_BCells_GD1_fastqc.html [2024-10-31 20:00:21,651] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H23Y2DMX2_n01_CITE-seq_test_BCells_GD1_fastqc.html [2024-10-31 20:00:21,698] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H23Y2DMX2_n02_CITE-seq_test_GEX_GD1_fastqc.html [2024-10-31 20:00:21,700] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H23Y2DMX2_n02_CITE-seq_test_GEX_GD1_fastqc.html [2024-10-31 20:00:21,749] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H23Y2DMX2_n02_CITE-seq_test_BCells_GD2_fastqc.html [2024-10-31 20:00:21,751] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H23Y2DMX2_n02_CITE-seq_test_BCells_GD2_fastqc.html [2024-10-31 20:00:21,797] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H23Y2DMX2_n02_CITE-seq_test_GEX_PI1_fastqc.html [2024-10-31 20:00:21,798] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H23Y2DMX2_n02_CITE-seq_test_GEX_PI1_fastqc.html [2024-10-31 20:00:21,851] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H23Y2DMX2_n01_CITE-seq_test_TCells_C1_fastqc.html [2024-10-31 20:00:21,853] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H23Y2DMX2_n01_CITE-seq_test_TCells_C1_fastqc.html [2024-10-31 20:00:21,900] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H23Y2DMX2_n02_CITE-seq_test_TCells_PI1_fastqc.html [2024-10-31 20:00:21,901] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H23Y2DMX2_n02_CITE-seq_test_TCells_PI1_fastqc.html [2024-10-31 20:00:21,954] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H23Y2DMX2_n01_CITE-seq_test_TCells_GD2_fastqc.html [2024-10-31 20:00:21,955] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H23Y2DMX2_n01_CITE-seq_test_TCells_GD2_fastqc.html [2024-10-31 20:00:22,549] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.3.2 [2024-10-31 20:00:22,552] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.3.2 [2024-10-31 20:00:22,571] multiqc.modules.custom_content.custom_content [INFO ] demux_report: Found 25 samples (table) [2024-10-31 20:00:22,580] multiqc.modules.custom_content.custom_content [INFO ] undetermined_barcodes: Found 20 samples (table) [2024-10-31 20:00:22,581] multiqc.modules.custom_content.custom_content [INFO ] run_stats: Found 1 samples (table) [2024-10-31 20:00:22,587] multiqc [DEBUG ] No samples found: conpair [2024-10-31 20:00:22,593] multiqc [DEBUG ] No samples found: peddy [2024-10-31 20:00:22,599] multiqc [DEBUG ] No samples found: somalier [2024-10-31 20:00:22,605] multiqc [DEBUG ] No samples found: methylQA [2024-10-31 20:00:22,616] multiqc [DEBUG ] No samples found: mosdepth [2024-10-31 20:00:22,621] multiqc [DEBUG ] No samples found: phantompeakqualtools [2024-10-31 20:00:22,625] multiqc [DEBUG ] No samples found: qualimap [2024-10-31 20:00:22,632] multiqc [DEBUG ] No samples found: preseq [2024-10-31 20:00:22,638] multiqc [DEBUG ] No samples found: quast [2024-10-31 20:00:22,644] multiqc [DEBUG ] No samples found: qorts [2024-10-31 20:00:22,650] multiqc [DEBUG ] No samples found: rna_seqc [2024-10-31 20:00:22,655] multiqc [DEBUG ] No samples found: rockhopper [2024-10-31 20:00:22,664] multiqc [DEBUG ] No samples found: rsem [2024-10-31 20:00:22,678] multiqc [DEBUG ] No samples found: rseqc [2024-10-31 20:00:22,683] multiqc [DEBUG ] No samples found: busco [2024-10-31 20:00:22,689] multiqc [DEBUG ] No samples found: goleft_indexcov [2024-10-31 20:00:22,694] multiqc [DEBUG ] No samples found: disambiguate [2024-10-31 20:00:22,700] multiqc [DEBUG ] No samples found: supernova [2024-10-31 20:00:22,718] multiqc [DEBUG ] No samples found: deeptools [2024-10-31 20:00:22,724] multiqc [DEBUG ] No samples found: sargasso [2024-10-31 20:00:22,729] multiqc [DEBUG ] No samples found: verifybamid [2024-10-31 20:00:22,734] multiqc [DEBUG ] No samples found: mirtrace [2024-10-31 20:00:22,740] multiqc [DEBUG ] No samples found: happy [2024-10-31 20:00:22,746] multiqc [DEBUG ] No samples found: mirtop [2024-10-31 20:00:22,754] multiqc [DEBUG ] No samples found: homer [2024-10-31 20:00:22,760] multiqc [DEBUG ] No samples found: macs2 [2024-10-31 20:00:22,765] multiqc [DEBUG ] No samples found: theta2 [2024-10-31 20:00:22,771] multiqc [DEBUG ] No samples found: snpeff [2024-10-31 20:00:22,780] multiqc [DEBUG ] No samples found: gatk [2024-10-31 20:00:22,785] multiqc [DEBUG ] No samples found: htseq [2024-10-31 20:00:22,792] multiqc [DEBUG ] No samples found: bcftools [2024-10-31 20:00:22,798] multiqc [DEBUG ] No samples found: featureCounts [2024-10-31 20:00:22,806] multiqc [DEBUG ] No samples found: fgbio [2024-10-31 20:00:22,823] multiqc [DEBUG ] No samples found: dragen [2024-10-31 20:00:22,829] multiqc [DEBUG ] No samples found: dedup [2024-10-31 20:00:22,835] multiqc [DEBUG ] No samples found: damageprofiler [2024-10-31 20:00:22,867] multiqc [DEBUG ] No samples found: biobambam2 [2024-10-31 20:00:22,872] multiqc [DEBUG ] No samples found: mtnucratio [2024-10-31 20:00:22,874] multiqc [DEBUG ] No samples found: picard [2024-10-31 20:00:22,880] multiqc [DEBUG ] No samples found: prokka [2024-10-31 20:00:22,885] multiqc [DEBUG ] No samples found: samblaster [2024-10-31 20:00:22,897] multiqc [DEBUG ] No samples found: samtools [2024-10-31 20:00:22,903] multiqc [DEBUG ] No samples found: sexdeterrmine [2024-10-31 20:00:22,910] multiqc [DEBUG ] No samples found: bamtools [2024-10-31 20:00:22,915] multiqc [DEBUG ] No samples found: jellyfish [2024-10-31 20:00:22,925] multiqc [DEBUG ] No samples found: vcftools [2024-10-31 20:00:22,932] multiqc [DEBUG ] No samples found: longranger [2024-10-31 20:00:22,938] multiqc [DEBUG ] No samples found: stacks [2024-10-31 20:00:22,944] multiqc [DEBUG ] No samples found: varscan2 [2024-10-31 20:00:22,962] multiqc [DEBUG ] No samples found: bbmap [2024-10-31 20:00:22,969] multiqc [DEBUG ] No samples found: bismark [2024-10-31 20:00:22,975] multiqc [DEBUG ] No samples found: biscuit [2024-10-31 20:00:22,981] multiqc [DEBUG ] No samples found: hicexplorer [2024-10-31 20:00:22,987] multiqc [DEBUG ] No samples found: hicup [2024-10-31 20:00:22,993] multiqc [DEBUG ] No samples found: hicpro [2024-10-31 20:00:22,999] multiqc [DEBUG ] No samples found: salmon [2024-10-31 20:00:23,005] multiqc [DEBUG ] No samples found: kallisto [2024-10-31 20:00:23,011] multiqc [DEBUG ] No samples found: slamdunk [2024-10-31 20:00:23,016] multiqc [DEBUG ] No samples found: star [2024-10-31 20:00:23,022] multiqc [DEBUG ] No samples found: hisat2 [2024-10-31 20:00:23,028] multiqc [DEBUG ] No samples found: tophat [2024-10-31 20:00:23,034] multiqc [DEBUG ] No samples found: bowtie2 [2024-10-31 20:00:23,039] multiqc [DEBUG ] No samples found: bowtie1 [2024-10-31 20:00:23,045] multiqc [DEBUG ] No samples found: snpsplit [2024-10-31 20:00:23,050] multiqc [DEBUG ] No samples found: kat [2024-10-31 20:00:23,055] multiqc [DEBUG ] No samples found: leehom [2024-10-31 20:00:23,061] multiqc [DEBUG ] No samples found: adapterRemoval [2024-10-31 20:00:23,066] multiqc [DEBUG ] No samples found: clipandmerge [2024-10-31 20:00:23,072] multiqc [DEBUG ] No samples found: cutadapt [2024-10-31 20:00:23,077] multiqc [DEBUG ] No samples found: flexbar [2024-10-31 20:00:23,082] multiqc [DEBUG ] No samples found: kaiju [2024-10-31 20:00:23,087] multiqc [DEBUG ] No samples found: kraken [2024-10-31 20:00:23,092] multiqc [DEBUG ] No samples found: malt [2024-10-31 20:00:23,098] multiqc [DEBUG ] No samples found: trimmomatic [2024-10-31 20:00:23,104] multiqc [DEBUG ] No samples found: sickle [2024-10-31 20:00:23,109] multiqc [DEBUG ] No samples found: skewer [2024-10-31 20:00:23,115] multiqc [DEBUG ] No samples found: sortmerna [2024-10-31 20:00:23,120] multiqc [DEBUG ] No samples found: biobloomtools [2024-10-31 20:00:23,126] multiqc [DEBUG ] No samples found: fastq_screen [2024-10-31 20:00:23,131] multiqc [DEBUG ] No samples found: afterqc [2024-10-31 20:00:23,136] multiqc [DEBUG ] No samples found: fastp [2024-10-31 20:00:27,582] multiqc.modules.fastqc.fastqc [INFO ] Found 50 reports [2024-10-31 20:00:27,943] multiqc [DEBUG ] No samples found: pycoqc [2024-10-31 20:00:27,949] multiqc [DEBUG ] No samples found: minionqc [2024-10-31 20:00:27,954] multiqc [DEBUG ] No samples found: multivcfanalyzer [2024-10-31 20:00:27,960] multiqc [DEBUG ] No samples found: clusterflow [2024-10-31 20:00:27,966] multiqc [DEBUG ] No samples found: bcl2fastq [2024-10-31 20:00:27,972] multiqc [DEBUG ] No samples found: interop [2024-10-31 20:00:27,982] multiqc [DEBUG ] No samples found: ivar [2024-10-31 20:00:27,987] multiqc [DEBUG ] No samples found: flash [2024-10-31 20:00:27,993] multiqc [DEBUG ] No samples found: seqyclean [2024-10-31 20:00:27,993] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found. [2024-10-31 20:00:27,993] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found. [2024-10-31 20:00:27,993] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found. [2024-10-31 20:00:27,993] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'Demultiplexing Report'. [2024-10-31 20:00:27,994] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Demultiplexing Report'. [2024-10-31 20:00:27,994] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'Demultiplexing Report'. [2024-10-31 20:00:27,994] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'Demultiplexing Report'. [2024-10-31 20:00:27,994] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'Demultiplexing Report'. [2024-10-31 20:00:27,994] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'Demultiplexing Report'. [2024-10-31 20:00:27,994] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module ' Barcodes of Undetermined Reads'. [2024-10-31 20:00:27,994] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module ' Barcodes of Undetermined Reads'. [2024-10-31 20:00:27,994] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module ' Barcodes of Undetermined Reads'. [2024-10-31 20:00:27,994] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module ' Barcodes of Undetermined Reads'. [2024-10-31 20:00:27,994] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module ' Barcodes of Undetermined Reads'. [2024-10-31 20:00:27,994] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module ' Barcodes of Undetermined Reads'. [2024-10-31 20:00:27,994] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module ' Barcodes of Undetermined Reads'. [2024-10-31 20:00:27,994] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'Run Statistics'. [2024-10-31 20:00:27,994] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Run Statistics'. [2024-10-31 20:00:27,994] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module 'Run Statistics'. [2024-10-31 20:00:27,994] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'Run Statistics'. [2024-10-31 20:00:27,994] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'Run Statistics'. [2024-10-31 20:00:27,994] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'Run Statistics'. [2024-10-31 20:00:27,994] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'Run Statistics'. [2024-10-31 20:00:27,994] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'FastQC'. [2024-10-31 20:00:27,994] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'FastQC'. [2024-10-31 20:00:27,994] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module 'FastQC'. [2024-10-31 20:00:27,994] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'FastQC'. [2024-10-31 20:00:27,994] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'FastQC'. [2024-10-31 20:00:27,994] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'FastQC'. [2024-10-31 20:00:27,994] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'FastQC'. [2024-10-31 20:00:28,052] multiqc [INFO ] Compressing plot data [2024-10-31 20:00:28,796] multiqc [INFO ] Report : multiqc_report.html [2024-10-31 20:00:28,796] multiqc [INFO ] Data : multiqc_data [2024-10-31 20:00:28,796] multiqc [DEBUG ] Moving data file from '/state/partition1/job-52885755/tmpwvbc27n8/multiqc_data' to '/scratch/gencore/GENEFLOW/work/nf/ec/f5fd06298572f5d1ca9d476c71f28f/merged/multiqc_data' [2024-10-31 20:00:28,934] multiqc [INFO ] MultiQC complete