FastQCFastQC Report
Thu 31 Oct 2024
H23Y2DMX2_n01_CITE-seq_test_GEX_PI1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH23Y2DMX2_n01_CITE-seq_test_GEX_PI1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences462840623
Sequences flagged as poor quality0
Sequence length26
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCAAATAAAAAAAAAAAAAAAAAAA6934830.14983192173259174No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAA6876600.1485738212741106No Hit
TGCCAAAAAAAAAAAAAAAAAAAAAA6126570.1323688910512939No Hit
GCCAAAAAAAAAAAAAAAAAAAAAAA4770030.10305988201904223No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)