FastQCFastQC Report
Thu 31 Oct 2024
H23Y2DMX2_n01_CITE-seq_test_GEX_GD2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH23Y2DMX2_n01_CITE-seq_test_GEX_GD2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences480976218
Sequences flagged as poor quality0
Sequence length26
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCAAATAAAAAAAAAAAAAAAAAAA11433450.23771341642509236No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAA9600630.19960716643998394No Hit
TGCCAAAAAAAAAAAAAAAAAAAAAA8242150.1713629425228671No Hit
CACAAAAAAAAAAAAAAAAAAAAAAA6283790.13064658427664713No Hit
GCAAAAAAAAAAAAAAAAAAAAAAAA5759750.11975124308537019No Hit
GCCAAAAAAAAAAAAAAAAAAAAAAA5506480.11448549416636647No Hit
CTCGAAAAAAAAAAAAAAAAAAAAAA5419220.11267126725172097No Hit
CAAGAAAAAAAAAAAAAAAAAAAAAA4904810.10197614385998603No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)