FastQCFastQC Report
Thu 31 Oct 2024
H23Y2DMX2_n01_CITE-seq_test_BCells_PI2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH23Y2DMX2_n01_CITE-seq_test_BCells_PI2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44030270
Sequences flagged as poor quality0
Sequence length26
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATAGACCTCCACGTGGCCGTGATAGC623590.1416275666717465No Hit
TCACAAGGTTAAGGGCCAAGAGTGAA573690.13029445424704414No Hit
CTCTACGCAGGGTATGGCGTTTTGCG550020.12491860713095787No Hit
ACACCAAGTGACAAATTATTAGGGGC548110.12448481465137506No Hit
CCTTACGCAAGTTAAGTTGAGCCGAA499390.1134196996747919No Hit
CAAGAAAGTTCGAATCAACGCCGTTA471270.10703318421622215No Hit
TTGCCGTCATCATCCCGCTCACGAGC471020.10697640509585792No Hit
GATCTAGCAAGGCTCCTCAGTTACCC455370.10342203216105647No Hit
CTACCCAGTTGAGTTCGAAGCTCGAC448650.1018958094056657No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)