H23V3BCXX l02n01 kb3_3_9.3410000000971a.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23V3BCXX l02n01 kb3_3_9.3410000000971a.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	138786
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1668	1.201850330725001	No Hit
GTATCAACGCAGAGTACGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAA	1542	1.11106307552635	No Hit
GTACGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1405	1.0123499488421022	No Hit
GAGTACGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1286	0.9266064300433762	No Hit
GTACGGGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1270	0.9150778897006903	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1015	0.7313417779891344	No Hit
TATCAACGCAGAGTACGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAA	830	0.598043030276829	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	687	0.4950067009640742	No Hit
GGTATCAACGCAGAGTACGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAA	577	0.41574798610810887	No Hit
GTATCAACGCAGAGTACGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAA	533	0.3840445001657228	No Hit
GAGTACGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	516	0.371795426051619	No Hit
GTACGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	516	0.371795426051619	No Hit
GTATCAACGCAGAGTACGGGCAGTGGTATCAACGCAAAAAAAAAAAAAAAA	426	0.30694738662401105	No Hit
GAGTACGGGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAA	414	0.2983009813669967	No Hit
GTACGGGGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	382	0.27524390068162496	No Hit
CTTATACACATCTCCGAGCCCACGAGACTCAACTGTATCTCGTATGCCGTC	323	0.23273240816797086	No Hit
TATCAACGCAGAGTACGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAA	323	0.23273240816797086	No Hit
ATCAACGCAGAGTACGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAA	318	0.2291297393108815	No Hit
GCATTGGATGGATGCCCGGGCATTGAGAAGGAAGGACGCTTTCAGAGGCGA	277	0.199587854682749	No Hit
GTACGGGAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	262	0.188779848111481	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTT	225	0.16212009856901993	No Hit
GGGAGATACCGTCTGTGATCCATGGATCTCCGATCGGGAAACCGTATCCAA	219	0.15779689594051272	No Hit
TATCAACGCAGAGTACGGGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAA	215	0.15491476085484127	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG	212	0.15275315954058766	No Hit
ACTTAGATGTTTCAGTTCGCTAAGTTTTCAAAGTCCAAAGAGCGCAGACTA	204	0.14698888936924476	No Hit
GGTATCAACGCAGAGTACGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAA	198	0.14266568674073754	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTT	165	0.11888807228394795	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	165	0.11888807228394795	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGT	163	0.11744700474111221	No Hit
GGTATCAACGCAGAGTACGGGCAGTGGTATCAACGCAAAAAAAAAAAAAAA	161	0.11600593719827648	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTTT	150	0.10808006571267996	No Hit
GAGTACGGGGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAA	148	0.10663899816984422	No Hit
GTACGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAG	147	0.10591846439842637	No Hit
GTATCAACGCAGAGTACGGGAGTGGTATCAACGCAAAAAAAAAAAAAAAAA	146	0.10519793062700848	No Hit
GTCCAAAGAGCGCAGACTAGCCACGGAGCTTGGATACGGTTTCCCGATCGG	142	0.10231579554133702	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	142	0.10231579554133702	No Hit

Adapter Content

Adapter graph

Kmer Content

$Kmer graph$

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATGCCG	45	1.9075742E-8	39.99936	43
TATCTCG	45	1.9075742E-8	39.99936	36
GTATGCC	45	1.9075742E-8	39.99936	42
ATGCCGT	45	1.9075742E-8	39.99936	44
CCACGAG	45	1.9075742E-8	39.99936	20
ACTGTAT	55	2.7121132E-9	36.817593	32
CGTATGC	50	4.8268703E-8	35.999424	41
CACGAGA	50	4.8268703E-8	35.999424	21
CAACTGT	50	4.8268703E-8	35.999424	30
TCAACTG	50	4.8268703E-8	35.999424	29
CTCGTAT	55	1.1157499E-7	32.72675	39
CTCAACT	55	1.1157499E-7	32.72675	28
TGTATCT	55	1.1157499E-7	32.72675	34
CCCACGA	55	1.1157499E-7	32.72675	19
CAGCGTA	30	0.0051322565	29.99952	34
CTGTATC	60	2.3934626E-7	29.99952	33
GAATCGG	30	0.0051322565	29.99952	5
CCAGCAC	30	0.0051322565	29.99952	3
TGAATCG	30	0.0051322565	29.99952	4
CACGGAG	40	6.1392103E-4	28.12455	22

Summary

Basic Statistics

Per base sequence quality

Per tile sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content