Basic Statistics
Measure | Value |
---|---|
Filename | H23V3BCXX l02n01 kb2_2_51.3410000000a286.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1590405 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CTTATACACATCTCCGAGCCCACGAGACTAGATCCTATCTCGTATGCCGTC | 21547 | 1.3548121390463437 | No Hit |
TCTTATACACATCTCCGAGCCCACGAGACTAGATCCTATCTCGTATGCCGT | 3240 | 0.20372169353089306 | No Hit |
TGATACCACCCCGTACTCTGCGTTGATACCTGTCTCTTATACACATCTCCG | 2118 | 0.13317362558593565 | No Hit |
CTCTTATACACATCTCCGAGCCCACGAGACTAGATCCTATCTCGTATGCCG | 1810 | 0.1138074892873199 | No Hit |
GATACCACCCCGTACTCTGCGTTGATACCTGTCTCTTATACACATCTCCGA | 1785 | 0.112235562639705 | No Hit |
GTATCAACGCAGAGTACGGGGTGGTATCACTGTCTCTTATACACATCTCCG | 1597 | 0.10041467424964082 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TGCCGTC | 2470 | 0.0 | 42.53879 | 45 |
ATGCCGT | 2790 | 0.0 | 37.65979 | 44 |
TATGCCG | 2955 | 0.0 | 35.32854 | 43 |
TATCTCG | 3000 | 0.0 | 34.723618 | 36 |
CCCACGA | 3045 | 0.0 | 34.506016 | 19 |
CCACGAG | 3050 | 0.0 | 34.449448 | 20 |
CGTATGC | 3045 | 0.0 | 34.21046 | 41 |
GTATGCC | 3070 | 0.0 | 34.151733 | 42 |
TCGTATG | 3075 | 0.0 | 33.876698 | 40 |
CTCGTAT | 3070 | 0.0 | 33.785297 | 39 |
CGAGACT | 3105 | 0.0 | 33.69431 | 23 |
AGACTAG | 3110 | 0.0 | 33.64014 | 25 |
GCCCACG | 3130 | 0.0 | 33.56895 | 18 |
ACGAGAC | 3135 | 0.0 | 33.51541 | 22 |
GACTAGA | 3115 | 0.0 | 33.513916 | 26 |
CCTATCT | 3155 | 0.0 | 33.017704 | 34 |
GAGACTA | 3190 | 0.0 | 32.937557 | 24 |
TCTCGTA | 3150 | 0.0 | 32.927258 | 38 |
CACGAGA | 3210 | 0.0 | 32.73234 | 21 |
GATCCTA | 3200 | 0.0 | 32.69401 | 31 |