Basic Statistics
Measure | Value |
---|---|
Filename | H23V3BCXX l02n01 kb2_1_51.34100000009c08.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 889200 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CTTATACACATCTCCGAGCCCACGAGACTAGATCCTATCTCGTATGCCGTC | 6591 | 0.7412280701754386 | No Hit |
GTATCAACGCAGAGTACGGGGTGGTATCCTGTCTCTTATACACATCTCCGA | 2127 | 0.2392037786774629 | No Hit |
GATACCACCCCGTACTCTGCGTTGATACCTGTCTCTTATACACATCTCCGA | 2104 | 0.23661718398560505 | No Hit |
GTATCAACGCAGAGTACGGGGTGGTATCACTGTCTCTTATACACATCTCCG | 1688 | 0.1898335582546109 | No Hit |
TGATACCACCCCGTACTCTGCGTTGATACCTGTCTCTTATACACATCTCCG | 1635 | 0.18387314439946018 | No Hit |
CTCTTATACACATCTCCGAGCCCACGAGACTAGATCCTATCTCGTATGCCG | 1541 | 0.17330184435447593 | No Hit |
TCTTATACACATCTCCGAGCCCACGAGACTAGATCCTATCTCGTATGCCGT | 1139 | 0.12809266756635176 | No Hit |
GGTATCAACGCAGAGTACGGGGTGGTATCCTGTCTCTTATACACATCTCCG | 1012 | 0.11381016644174538 | No Hit |
GATACCACCCCGTACTCTGCGTTGATACCCTGTCTCTTATACACATCTCCG | 1001 | 0.11257309941520469 | No Hit |
GTATCAACGCAGAGTACGGGGTGGTATCAACGCCTGTCTCTTATACACATC | 936 | 0.10526315789473684 | No Hit |
ATACCACTGCCCGTACTCTGCGTTGATACCTGTCTCTTATACACATCTCCG | 904 | 0.10166441745389114 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TGCCGTC | 705 | 0.0 | 40.530445 | 45 |
ATGCCGT | 830 | 0.0 | 34.426464 | 44 |
CTAACGC | 230 | 0.0 | 34.237892 | 3 |
TATGCCG | 895 | 0.0 | 31.926216 | 43 |
GCCCACG | 890 | 0.0 | 31.852777 | 18 |
GTATGCC | 905 | 0.0 | 31.573442 | 42 |
CTCGTAT | 910 | 0.0 | 31.152718 | 39 |
CCCACGA | 925 | 0.0 | 30.89077 | 19 |
AGACTAG | 930 | 0.0 | 30.724695 | 25 |
TATCTCG | 920 | 0.0 | 30.569546 | 36 |
TCGTATG | 935 | 0.0 | 30.560392 | 40 |
CGTATGC | 950 | 0.0 | 30.077856 | 41 |
CGAGACT | 965 | 0.0 | 29.843477 | 23 |
GCTAACG | 265 | 0.0 | 29.715904 | 2 |
AGCCCAC | 960 | 0.0 | 29.53018 | 17 |
CGAGCCC | 960 | 0.0 | 29.53018 | 15 |
CCTATCT | 940 | 0.0 | 29.44042 | 34 |
ATCCTAT | 950 | 0.0 | 29.367355 | 32 |
CCACGAG | 975 | 0.0 | 29.306631 | 20 |
ACGAGAC | 990 | 0.0 | 28.86259 | 22 |