H23V3BCXX l01n01 kb2_4_80.3410000000b20b.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23V3BCXX l01n01 kb2_4_80.3410000000b20b.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	716322
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTGTTATACATCTCGTATGCCGTC	12580	1.7561934437306126	RNA PCR Primer, Index 39 (95% over 21bp)
TCTTATACACATCTCCGAGCCCACGAGACTGTTATACATCTCGTATGCCGT	4165	0.5814424239378381	No Hit
AAAAAGTACTCTGCGTTGATACCTGTCTCTTATACACATCTCCGAGCCCAC	3667	0.5119206167058948	No Hit
AAAAAGTACTCTGCGTTGATACCCTGTCTCTTATACACATCTCCGAGCCCA	1355	0.18916074056080925	No Hit
AAAGTACTCTGCGTTGATACCTGTCTCTTATACACATCTCCGAGCCCACGA	1347	0.18804392438037643	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTGTTATACATCTCGTATGCCG	1283	0.17910939493691386	No Hit
AAAAAGTACTCTGCGTTGATACTGTCTCTTATACACATCTCCGAGCCCACG	788	0.11000639377263298	No Hit
GTCATAAGACAGGTATCGTAAATTTATTTACGAGGCAAACCGGGAGAAGTG	772	0.10777276141176732	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGCCGTC	1315	0.0	42.9457	45
CTCCTCG	25	0.0021068368	35.999104	9
ATGCCGT	1690	0.0	33.416332	44
TATGCCG	1855	0.0	30.443989	43
CATCTCG	1865	0.0	30.160112	36
TCGTATG	1875	0.0	30.119253	40
CTCGTAT	1880	0.0	30.039146	39
GGCCGTA	30	0.005146604	29.999254	7
CGTATGC	1890	0.0	29.88021	41
ACGAGAC	1900	0.0	29.841364	22
CGAGACT	1905	0.0	29.763044	23
GTTATAC	1905	0.0	29.763044	30
ATCTCGT	1895	0.0	29.682642	37
CACGAGA	1920	0.0	29.530516	21
CCACGAG	1935	0.0	29.3016	20
TCTCGTA	1965	0.0	28.625244	38
ACTGTTA	2010	0.0	28.208256	27
TGTTATA	2020	0.0	28.179993	29
GTATGCC	2070	0.0	27.281933	42
GACTGTT	2125	0.0	26.68169	26