Basic Statistics
Measure | Value |
---|---|
Filename | H23V3BCXX l01n01 kb2_1_15.3410000000999f.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 446694 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CTTATACACATCTCCGAGCCCACGAGACTAGATCCTATCTCGTATGCCGTC | 2270 | 0.5081778577728825 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1330 | 0.2977429739374158 | No Hit |
GAGTACGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 954 | 0.21356902040322906 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 885 | 0.198122204462115 | No Hit |
GTATCAACGCAGAGTACGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAA | 852 | 0.19073459683810393 | No Hit |
GTACGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 792 | 0.17730258297626564 | No Hit |
GTACGGGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 778 | 0.17416844640850335 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 695 | 0.15558749389962703 | No Hit |
TATCAACGCAGAGTACGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAA | 504 | 0.11282891643944176 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATGCCG | 385 | 0.0 | 36.232685 | 43 |
GTATGCC | 390 | 0.0 | 35.768166 | 42 |
TCGTATG | 390 | 0.0 | 35.768166 | 40 |
ATGCCGT | 395 | 0.0 | 35.315403 | 44 |
CGTATGC | 405 | 0.0 | 34.443417 | 41 |
CTCGTAT | 405 | 0.0 | 34.443417 | 39 |
TCTCGTA | 405 | 0.0 | 34.443417 | 38 |
TATCTCG | 400 | 0.0 | 34.311478 | 36 |
CGAGACT | 390 | 0.0 | 34.03745 | 23 |
ATCTCGT | 410 | 0.0 | 34.023376 | 37 |
AGACTAG | 380 | 0.0 | 33.748993 | 25 |
GCCCACG | 420 | 0.0 | 33.213295 | 18 |
CCTATCT | 400 | 0.0 | 33.18651 | 34 |
GACTAGA | 395 | 0.0 | 33.036987 | 26 |
GAGACTA | 390 | 0.0 | 32.883636 | 24 |
CCCACGA | 425 | 0.0 | 32.822548 | 19 |
TAGATCC | 400 | 0.0 | 32.624027 | 29 |
ACGAGAC | 450 | 0.0 | 31.999046 | 22 |
TGCCGTC | 435 | 0.0 | 31.550781 | 45 |
TCCTATC | 410 | 0.0 | 31.279554 | 33 |