H23NVBCXX l02n01 6h_88.34100000004dc1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23NVBCXX l02n01 6h_88.34100000004dc1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	11148
Sequences flagged as poor quality	0
Sequence length	51
%GC	51

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGTCTTAGTATCTCGTATGCCGTC	2356	21.13383566559024	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGTCTTAGTATCTCGTATGCCG	90	0.8073196986006458	No Hit
CTTATACACATCTCCGAGCCCACGAGACGATAACCTATCTCGTATGCCGTC	36	0.32292787944025836	No Hit
CCTGTCTCTTATACACATCTCCGAGCCCACGAGACGTCTTAGTATCTCGTA	32	0.2870470039468963	No Hit
GCTGTCTCTTATACACATCTCCGAGCCCACGAGACGTCTTAGTATCTCGTA	29	0.2601363473268748	No Hit
GTCTCTTATACACATCTCCGAGCCCACGAGACGTCTTAGTATCTCGTATGC	21	0.1883745963401507	No Hit
TTATACACATCTCCGAGCCCACGAGACGTCTTAGTATCTCGTATGCCGTCT	21	0.1883745963401507	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGTCTTAGTATCTCGTATGCCGT	17	0.15249372084678867	No Hit
CTTATACACATCTCCGAGCCCACGAGACGACGCTATATCTCGTATGCCGTC	16	0.14352350197344815	No Hit
CTTATACACATCTCCGAGCCCACGAGACGAATTGCTATCTCGTATGCCGTC	13	0.11661284535342661	RNA PCR Primer, Index 27 (95% over 21bp)
ACCTGTCTCTTATACACATCTCCGAGCCCACGAGACGTCTTAGTATCTCGT	12	0.1076426264800861	No Hit
CTTCTGGTTGTACAACGAGTACTAGTTCTGGTTGTACTACTGTAGTGACTT	12	0.1076426264800861	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TGCCGTC	280	41.785717	45
ATGCCGT	280	41.785717	44
TATGCCG	295	39.66102	43
GTATGCC	300	39.0	42
CTCGTAT	305	38.360657	39
TCTCGTA	310	37.74194	38
CGTATGC	310	37.74194	41
TCGTATG	310	37.74194	40
ATCTCGT	330	35.454544	37
GTATCTC	320	35.15625	35
CTTAGTA	320	35.15625	31
AGTATCT	320	35.15625	34
TAGTATC	320	35.15625	33
TTAGTAT	320	35.15625	32
TATCTCG	335	34.25373	36
GTCTTAG	340	33.750004	29
TCTTAGT	340	33.750004	30
CGTCTTA	340	33.088238	28
AGACGTC	335	32.91045	25
GACGTCT	335	32.91045	26