H23NVBCXX l02n01 6h_39.34100000004a5b.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23NVBCXX l02n01 6h_39.34100000004a5b.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2301
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGATAACCTATCTCGTATGCCGTC	85	3.694046066927423	No Hit
CTTATACACATCTCCGAGCCCACGAGACTTGCTGGAATCTCGTATGCCGTC	75	3.259452411994785	No Hit
CTTATACACATCTCCGAGCCCACGAGACGATCGTGTATCTCGTATGCCGTC	48	2.0860495436766624	No Hit
CTTATACACATCTCCGAGCCCACGAGACAACATAATATCTCGTATGCCGTC	25	1.086484137331595	No Hit
CTTATACACATCTCCGAGCCCACGAGACGACGCTATATCTCGTATGCCGTC	24	1.0430247718383312	No Hit
CTTATACACATCTCCGAGCCCACGAGACTGCGACCTATCTCGTATGCCGTC	22	0.9561060408518035	No Hit
CTTATACACATCTCCGAGCCCACGAGACGAATTGCTATCTCGTATGCCGTC	12	0.5215123859191656	RNA PCR Primer, Index 27 (95% over 21bp)
CTTATACACATCTCCGAGCCCACGAGACAGTGTCTTATCTCGTATGCCGTC	7	0.3042155584528466	No Hit
CTTATACACATCTCCGAGCCCACGAGACTACTTGCAATCTCGTATGCCGTC	7	0.3042155584528466	TruSeq Adapter, Index 12 (95% over 21bp)
TCTTATACACATCTCCGAGCCCACGAGACTTGCTGGAATCTCGTATGCCGT	6	0.2607561929595828	No Hit
CTTATACACATCTCCGAGCCCACGAGACCTCTACTTATCTCGTATGCCGTC	5	0.21729682746631898	No Hit
TTATACACATCTCCGAGCCCACGAGACTTGCTGGAATCTCGTATGCCGTCT	4	0.1738374619730552	Illumina PCR Primer Index 8 (95% over 21bp)
TCTTATACACATCTCCGAGCCCACGAGACGATAACCTATCTCGTATGCCGT	4	0.1738374619730552	No Hit
TTATACACATCTCCGAGCCCACGAGACTGCGACCTATCTCGTATGCCGTCT	4	0.1738374619730552	Illumina Paired End PCR Primer 2 (95% over 21bp)
TTATACACATCTCCGAGCCCACGAGACGATAACCTATCTCGTATGCCGTCT	4	0.1738374619730552	No Hit
TCTTATACACATCTCCGAGCCCACGAGACAACATAATATCTCGTATGCCGT	3	0.1303780964797914	No Hit
GCGTTGATACCACTGCTTCGCGCAAAAAAAAAAAAAAGTACTCTGCGTTGA	3	0.1303780964797914	No Hit

Adapter graph

$Kmer graph$

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATGCCGT	25	2.8056715E-5	45.0	44
AGCCCAC	30	8.240019E-5	37.499996	17
GTATGCC	30	8.240019E-5	37.499996	42
ATCTCGT	30	8.240019E-5	37.499996	37
ATCTCCG	30	8.240019E-5	37.499996	10
CACATCT	30	8.240019E-5	37.499996	7
GCCCACG	30	8.240019E-5	37.499996	18
TGCCGTC	30	8.240019E-5	37.499996	45
CCACGAG	30	8.240019E-5	37.499996	20
TATGCCG	30	8.240019E-5	37.499996	43
GAGCCCA	30	8.240019E-5	37.499996	16
CACGAGA	30	8.240019E-5	37.499996	21
CCCACGA	30	8.240019E-5	37.499996	19
TCTCGTA	30	8.240019E-5	37.499996	38
ACGAGAC	30	8.240019E-5	37.499996	22
CGTATGC	30	8.240019E-5	37.499996	41
CGAGCCC	30	8.240019E-5	37.499996	15
CCGAGCC	30	8.240019E-5	37.499996	14
TCGTATG	30	8.240019E-5	37.499996	40
TCTCCGA	30	8.240019E-5	37.499996	11