H23NVBCXX l02n01 48h_88.34100000006d94.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23NVBCXX l02n01 48h_88.34100000006d94.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	41377
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACAACATAATATCTCGTATGCCGTC	2157	5.213041061459265	No Hit
TTATACACATCTCCGAGCCCACGAGACAACATAATATCTCGTATGCCGTCT	245	0.5921163931652851	RNA PCR Primer, Index 44 (95% over 22bp)
CTTATACACATCTCCGAGCCCACGAGACAGATATAAATCTCGTATGCCGTC	172	0.41568987601807766	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	71	0.17159291393769485	No Hit
TCTTATACACATCTCCGAGCCCACGAGACAACATAATATCTCGTATGCCGT	57	0.13775769147110714	No Hit
CTTATACACATCTCCGAGCCCACGAGACGACGCTATATCTCGTATGCCGTC	56	0.13534088986635087	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	49	0.11842327863305702	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	48	0.11600647702830075	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTATGCC	330	36.817192	42
TATGCCG	330	36.817192	43
ATGCCGT	330	36.817192	44
CGTATGC	330	36.817192	41
TCGTATG	330	36.817192	40
CTCGTAT	325	36.691322	39
CGAGCCC	335	36.267685	15
ATCTCGT	330	36.135395	37
GCCCACG	330	36.135395	18
CCACGAG	330	36.135395	20
CCCACGA	330	36.135395	19
TGCCGTC	340	35.734333	45
ACGAGAC	340	35.734333	22
TCTCCGA	340	35.734333	11
CTCCGAG	340	35.734333	12
TATCTCG	315	35.713326	36
GAGCCCA	335	35.59606	16
CACGAGA	335	35.59606	21
TCTCGTA	335	35.59606	38
ATATCTC	310	35.56356	35