H23NVBCXX l02n01 48h_60.34100000006bd9.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23NVBCXX l02n01 48h_60.34100000006bd9.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	88771
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCAAGGCGAATCTCGTATGCCGTC	1522	1.7145238873055388	No Hit
CTGTAGGACGTGGAATATGGCAAGAAAACTGAAAATCATGGAAAATGAGAA	364	0.41004382061709344	No Hit
GTCCTAAAGTGTGTATTTCTCATTTTCCGTGATTTTCAGTTTTCTCGCCAT	222	0.2500816708159196	No Hit
TTATACACATCTCCGAGCCCACGAGACCAAGGCGAATCTCGTATGCCGTCT	143	0.16108864381385812	No Hit
GAATATGGCAAGAAAACTGAAAATCATGGAAAATGAGAAACATCCACTTGA	138	0.15545617375043652	No Hit
GTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGCC	131	0.14757071566164626	No Hit
GTCCTACAGTGTGCATTTCTCATTTTTCACGTTTTTCAGTGATTTCGTCAT	102	0.1149023892938009	No Hit
CTGTAGGACATGGAATATGGCAAGAAAACTGAAAATCATGGAAAATGAGAA	94	0.10589043719232633	No Hit
GATATACACTGTTCTACAAATCCCGTTTCCAACGAATGTGTTTTTCAGTGT	93	0.104763943179642	No Hit
CTTTAGGACGTGAAATATGGCGAGGAAAACTGAAAAAGGTGGAAAATTTAG	91	0.10251095515427336	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCCGTCT	30	1.1314559E-4	37.499996	45
ATGCCGT	190	0.0	36.710526	44
CGAGACC	180	0.0	36.25	23
CAAGGCG	175	0.0	36.000004	29
CGAGCCC	200	0.0	36.000004	15
GGCGAAT	175	0.0	36.000004	32
CCACGAG	200	0.0	36.000004	20
ACGAGAC	195	0.0	35.76923	22
TGCCGTC	195	0.0	35.76923	45
GCGAATC	170	0.0	35.735294	33
CTCCGAG	210	0.0	35.357143	12
TCCGAGC	210	0.0	35.357143	13
TCTCCGA	210	0.0	35.357143	11
GCCCACG	205	0.0	35.121952	18
CCGAGCC	205	0.0	35.121952	14
CGAATCT	180	0.0	35.0	34
CACGAGA	200	0.0	34.875004	21
TATGCCG	200	0.0	34.875004	43
CCCACGA	200	0.0	34.875004	19
CTCGTAT	195	0.0	34.615383	39