H23NVBCXX l02n01 48h_47.34100000006b02.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23NVBCXX l02n01 48h_47.34100000006b02.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	56889
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCATTCCGAATCTCGTATGCCGTC	3985	7.004869131114979	RNA PCR Primer, Index 46 (95% over 21bp)
TCTTATACACATCTCCGAGCCCACGAGACCATTCCGAATCTCGTATGCCGT	221	0.3884758037581958	No Hit
CTGTAGGACGTGGAATATGGCAAGAAAACTGAAAATCATGGAAAATGAGAA	197	0.3462883861554958	No Hit
TTATACACATCTCCGAGCCCACGAGACCATTCCGAATCTCGTATGCCGTCT	172	0.30234315948601664	RNA PCR Primer, Index 18 (95% over 21bp)
GTCCTAAAGTGTGTATTTCTCATTTTCCGTGATTTTCAGTTTTCTCGCCAT	137	0.2408198421487458	No Hit
GTGGTATCAACGCAGAGTACTTTTTCTGTCTCTTATACACATCTCCGAGCC	114	0.200390233612825	No Hit
AAAAAGTACTCTGCGTTGATACCACCTGTCTCTTATACACATCTCCGAGCC	112	0.19687461547926666	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCATTCCGAATCTCGTATGCCG	94	0.16523405227724164	No Hit
CTTATACACATCTCCGAGCCCACGAGACGTCTTAGTATCTCGTATGCCGTC	70	0.12304663467454166	No Hit
CTTTAGGACGTGAAATATGGCGAGGAAAACTGAAAAAGGTGGAAAATTTAG	70	0.12304663467454166	No Hit
GTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGCC	66	0.116015398407425	No Hit
GGTATCAACGCAGAGTACTTTTTCTGTCTCTTATACACATCTCCGAGCCCA	58	0.10195292587319164	No Hit
CTGAAGGACCTGGAATATGGCGAGAAAACTGAAAATCACGGAAAATGAGAA	57	0.1001951168064125	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TGCCGTC	445	42.471912	45
ATGCCGT	475	39.789474	44
TATGCCG	480	39.374996	43
TCTCGTA	475	39.31579	38
CTCGTAT	475	39.31579	39
GTATGCC	480	38.906246	42
TCGTATG	480	38.906246	40
AATCTCG	460	38.641308	36
ATCTCGT	485	38.505157	37
CGTATGC	485	38.505157	41
TTCCGAA	470	38.29787	31
CCGAATC	470	38.29787	33
CGAATCT	465	38.225807	34
CGAGACC	475	37.894737	23
ATTCCGA	475	37.894737	30
GACCATT	475	37.894737	26
CCACGAG	500	37.800003	20
CACGAGA	500	37.800003	21
ACCATTC	480	37.499996	27
CATTCCG	480	37.499996	29