##FastQC 0.11.2 >>Basic Statistics pass #Measure Value Filename H23NVBCXX l02n01 48h_46.34100000006af4.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8041 Sequences flagged as poor quality 0 Sequence length 51 %GC 41 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 36.04352692451187 38.0 38.0 38.0 32.0 38.0 2 36.04738216639721 38.0 38.0 38.0 32.0 38.0 3 35.98992662604154 38.0 32.0 38.0 32.0 38.0 4 36.2152717323716 38.0 38.0 38.0 32.0 38.0 5 36.13157567466733 38.0 38.0 38.0 32.0 38.0 6 38.00534759358289 40.0 38.0 40.0 38.0 40.0 7 37.75550304688472 40.0 38.0 40.0 32.0 40.0 8 37.7459271234921 40.0 38.0 40.0 32.0 40.0 9 37.91282178833478 40.0 38.0 40.0 32.0 40.0 10 37.69406790200224 40.0 38.0 40.0 32.0 40.0 11 37.75848775027982 40.0 38.0 40.0 32.0 40.0 12 37.55005596318866 40.0 38.0 40.0 32.0 40.0 13 37.74070389255068 40.0 38.0 40.0 32.0 40.0 14 37.58636985449571 40.0 38.0 40.0 32.0 40.0 15 37.6205695808979 40.0 38.0 40.0 32.0 40.0 16 37.36189528665589 40.0 38.0 40.0 32.0 40.0 17 37.315010570824526 40.0 38.0 40.0 32.0 40.0 18 37.31227459271235 40.0 38.0 40.0 32.0 40.0 19 37.4480785971894 40.0 38.0 40.0 32.0 40.0 20 37.5618704141276 40.0 38.0 40.0 32.0 40.0 21 37.689342121626666 40.0 38.0 40.0 32.0 40.0 22 37.636861086929486 40.0 38.0 40.0 32.0 40.0 23 37.687974132570574 40.0 38.0 40.0 32.0 40.0 24 37.52891431414003 40.0 38.0 40.0 32.0 40.0 25 37.49881855490611 40.0 38.0 40.0 32.0 40.0 26 37.41673921154085 40.0 38.0 40.0 32.0 40.0 27 37.42382788210421 40.0 38.0 40.0 32.0 40.0 28 37.49732620320856 40.0 38.0 40.0 32.0 40.0 29 37.35430916552668 40.0 38.0 40.0 32.0 40.0 30 37.36686979231439 40.0 38.0 40.0 32.0 40.0 31 37.387638353438625 40.0 38.0 40.0 32.0 40.0 32 37.325830120631764 40.0 38.0 40.0 32.0 40.0 33 37.31339385648551 40.0 38.0 40.0 32.0 40.0 34 37.38826016664594 40.0 38.0 40.0 32.0 40.0 35 37.293620196492974 40.0 38.0 40.0 32.0 40.0 36 37.21738589727646 40.0 38.0 40.0 32.0 40.0 37 37.19649297351076 40.0 38.0 40.0 32.0 40.0 38 37.372714836463125 40.0 38.0 40.0 32.0 40.0 39 37.17497823653775 38.0 38.0 40.0 32.0 40.0 40 37.21751025991792 38.0 38.0 40.0 32.0 40.0 41 37.290262405173486 40.0 38.0 40.0 32.0 40.0 42 37.30655391120507 40.0 38.0 40.0 32.0 40.0 43 37.448824773038176 40.0 38.0 40.0 32.0 40.0 44 37.26762840442731 40.0 38.0 40.0 32.0 40.0 45 37.33130207685611 40.0 38.0 40.0 32.0 40.0 46 37.022509638104715 38.0 38.0 40.0 32.0 40.0 47 37.04054222111677 38.0 38.0 40.0 32.0 40.0 48 37.06591219997513 38.0 38.0 40.0 32.0 40.0 49 36.86208183061808 38.0 38.0 40.0 32.0 40.0 50 36.79890560875513 38.0 38.0 40.0 32.0 40.0 51 36.41462504663599 38.0 38.0 40.0 32.0 40.0 >>END_MODULE >>Per tile sequence quality warn #Tile Base Mean 2201 1 1.354526723276713 2201 2 1.103429513195131 2201 3 1.2506216439810132 2201 4 1.3649366258741296 2201 5 0.7356800751331889 2201 6 1.349357283341682 2201 7 1.1732017982018021 2201 8 1.4846758710040007 2201 9 1.6822043841575223 2201 10 1.94721671557609 2201 11 1.3800418331668425 2201 12 1.6224016218156905 2201 13 1.813242031406098 2201 14 1.274724104020983 2201 15 2.1384872939560466 2201 16 2.4380290282634007 2201 17 2.1507166661463444 2201 18 1.5257964041167043 2201 19 1.7765087776806538 2201 20 2.140557164189964 2201 21 -0.45828169226607685 2201 22 1.6175364999583834 2201 23 2.1727166063103525 2201 24 1.5763450091575066 2201 25 1.7337470472236163 2201 26 1.0104905511155664 2201 27 -0.01942022820929168 2201 28 0.596113196699136 2201 29 0.8211117007992144 2201 30 1.2069907956626693 2201 31 -0.28268008033633407 2201 32 -0.03463105904511821 2201 33 1.2252072146603368 2201 34 1.6230685980686133 2201 35 0.3306076735764236 2201 36 1.7948427223817802 2201 37 0.16837556974275714 2201 38 2.5690956829628675 2201 39 1.304391832126207 2201 40 2.2411745155885683 2201 41 -0.3478161812146041 2201 42 1.0300247929154196 2201 43 0.9057252643190239 2201 44 1.6181124864718655 2201 45 1.414061784569597 2201 46 1.9142782998251846 2201 47 1.9611171380702785 2201 48 1.5244601102022912 2201 49 2.352232858287536 2201 50 2.409904938811202 2201 51 2.621890934586247 1101 1 0.48331460206459553 1101 2 1.6943386041042245 1101 3 -1.20392381056444 1101 4 0.4103911713286763 1101 5 -0.2567441672910533 1101 6 1.061478495462893 1101 7 0.748959373959373 1101 8 1.1967970831252117 1101 9 0.8791740811272248 1101 10 1.6441864125457926 1101 11 1.1224660755910847 1101 12 0.8648258642399327 1101 13 -0.7397882716241995 1101 14 1.1686634979603738 1101 15 1.9869721424408908 1101 16 2.1198472100815806 1101 17 2.0143530297827112 1101 18 2.2682206465409465 1101 19 1.988629989801865 1101 20 1.9890420126748083 1101 21 1.6780819440975563 1101 22 -0.23852410610222563 1101 23 1.687868121461868 1101 24 1.9854359182484131 1101 25 0.9761712896478585 1101 26 -0.5273882367632226 1101 27 1.9502767414876772 1101 28 0.8385374391233782 1101 29 1.7150510947386053 1101 30 2.252445341117216 1101 31 1.8688350711788217 1101 32 1.9502174258033662 1101 33 2.437328426781548 1101 34 0.11549284049285546 1101 35 1.2018197947885412 1101 36 1.870600298139351 1101 37 1.8047392061063903 1101 38 1.7509138647810474 1101 39 1.6831797109140894 1101 40 2.286629061043115 1101 41 1.8340020006035758 1101 42 1.7572975201881462 1101 43 2.299664658258415 1101 44 1.8756882440476232 1101 45 1.3383042088120263 1101 46 1.4900358755827554 1101 47 2.021723198676341 1101 48 1.7971873829295646 1101 49 1.7310207370754185 1101 50 1.2886928175990846 1101 51 -0.41598785329254184 2202 1 0.8090721778221663 2202 2 0.012520422286044663 2202 3 -0.38574199238261997 2202 4 0.2740275349650432 2202 5 -0.3552290157758975 2202 6 -2.0142790802946777 2202 7 -1.644980019980018 2202 8 -4.1516877653596325 2202 9 -2.590522888569744 2202 10 -2.5073287389693633 2202 11 0.1982236513486555 2202 12 -3.83214383272977 2202 13 -0.09584887768480854 2202 14 0.3656331949300764 2202 15 -0.8615127060439534 2202 16 -0.5619709717365993 2202 17 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-0.7599641244172446 1213 47 0.10505653200966947 1213 48 1.6305207162629003 1213 49 1.8976874037420828 1213 50 0.6220261509324132 1213 51 -0.5826545199592061 >>END_MODULE >>Per sequence quality scores pass #Quality Count 21 3.0 22 5.0 23 14.0 24 21.0 25 30.0 26 50.0 27 78.0 28 100.0 29 131.0 30 134.0 31 182.0 32 216.0 33 257.0 34 293.0 35 400.0 36 477.0 37 786.0 38 1346.0 39 3518.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 26.23787011694451 18.997263000746454 14.854441403334162 39.91042547897487 2 9.638104713344111 19.960203954732 55.26675786593708 15.134933465986816 3 13.642581768436763 23.98955353811715 46.07635866185798 16.29150603158811 4 9.165526675786593 38.16689466484268 32.71981096878498 19.94776769058575 5 11.030966297724163 30.49371968660614 49.29735107573685 9.177962939932845 6 20.992413878870785 53.00335779131948 16.0676532769556 9.936575052854122 7 16.78895659743813 29.02624051734859 20.743688595945777 33.4411142892675 8 15.18467852257182 53.115284168635746 18.64195995522945 13.058077353562988 9 17.659495087675662 17.60975003109066 19.43788086058948 45.2928740206442 10 11.752269618206691 45.45454545454545 28.168138291257307 14.625046635990548 11 22.6464370103221 21.25357542594205 42.86780251212536 13.232185051610495 12 15.134933465986816 23.268250217634623 27.95672180077105 33.64009451560751 13 18.43054346474319 20.955105086432035 44.07412013431165 16.54023131451312 14 12.933714712100485 22.12411391617958 24.26315134933466 40.679020022385274 15 16.378559880611864 28.19301081954981 20.29598308668076 35.13244621315757 16 34.53550553413754 26.588732744683497 23.877627160800895 14.998134560378062 17 15.682129088421837 46.73548066160925 23.081706255440864 14.500683994528044 18 34.261907722920036 26.240517348588483 25.34510633005845 14.15246859843303 19 16.378559880611864 24.30046014177341 24.238278821042158 35.08270115657257 20 15.781619201591843 25.85499316005472 22.845417236662108 35.517970401691336 21 14.475811466235545 26.02910085810223 22.721054595199604 36.77403308046263 22 14.550429051113046 45.52916303942296 22.5718194254446 17.348588484019402 23 14.7121004850143 25.606267877129714 23.93980848153215 35.74182315632384 24 35.18219126974257 24.909837084939685 24.362641462504662 15.545330182813084 25 15.358786220619326 45.00683994528043 23.98955353811715 15.644820295983086 26 34.93346598681756 25.3077975376197 25.29536127347345 14.463375202089294 27 15.17224225842557 45.52916303942296 24.312896405919663 14.985698296231812 28 14.040542221116775 26.414625046635994 23.865190896654646 35.67964183559259 29 16.75164780499938 24.934709613232183 23.355304066658373 34.95833851511006 30 14.017412935323383 44.71393034825871 25.062189054726367 16.206467661691544 31 15.396095013058078 25.046635990548438 43.20358164407412 16.353687352319362 32 14.848899390623057 26.414625046635994 42.85536624797911 15.881109314761845 33 15.48314886208183 23.49210297226713 25.693321726153464 35.33142643949758 34 16.104962069394354 23.317995274219623 25.631140405422208 34.94590225096381 35 33.4411142892675 25.046635990548438 24.661111802014673 16.851137918169382 36 14.537992786966795 43.87513990797164 25.34510633005845 16.241760975003107 37 14.189777390871782 43.57666956846163 25.556522820544707 16.677030220121875 38 15.20955105086432 21.974878746424576 45.491854246984204 17.323715955726897 39 14.376321353065538 21.676408406914565 27.098619574679766 36.84865066534013 40 15.806491729884343 21.266011690088295 45.87737843551797 17.050118144509387 41 15.644820295983086 20.731252331799528 26.38975251834349 37.234174853873895 42 34.98321104340256 20.171620445218256 27.882104215893545 16.963064295485637 43 13.493346598681754 22.37283919910459 47.64332794428554 16.49048625792812 44 13.58040044770551 41.561994776769055 27.397089914189777 17.460514861335653 45 13.891307051361771 21.726153463499564 46.98420594453426 17.3983335406044 46 33.4411142892675 21.203830369357046 26.538987688098498 18.816067653276956 47 12.896405919661733 22.89516229324711 26.041537122248474 38.16689466484268 48 13.990797164531774 20.470090784728267 26.327571197612237 39.211540853127715 49 32.607884591468725 21.639099614475814 26.974256933217262 18.778758860838206 50 11.76470588235294 21.514736973013306 46.18828503917423 20.53227210545952 51 11.304564108941674 21.203830369357046 27.334908593458522 40.15669692824276 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.5 2 1.0 3 1.5 4 2.0 5 1.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 2.5 12 5.0 13 4.5 14 4.0 15 7.5 16 11.0 17 6.0 18 1.0 19 3.0 20 5.0 21 3.5 22 2.0 23 4.0 24 6.0 25 6.5 26 18.0 27 29.0 28 66.5 29 104.0 30 237.5 31 371.0 32 613.0 33 855.0 34 1034.0 35 1213.0 36 1197.5 37 1182.0 38 985.5 39 789.0 40 607.5 41 426.0 42 324.5 43 223.0 44 189.0 45 155.0 46 160.5 47 166.0 48 166.5 49 167.0 50 249.5 51 332.0 52 1017.5 53 1703.0 54 904.0 55 105.0 56 86.0 57 67.0 58 49.0 59 31.0 60 28.5 61 26.0 62 22.0 63 18.0 64 16.0 65 14.0 66 11.0 67 8.0 68 6.5 69 5.0 70 3.5 71 2.0 72 2.0 73 2.0 74 2.5 75 2.0 76 1.0 77 0.5 78 0.0 79 0.0 80 0.0 81 0.0 82 0.0 83 0.0 84 0.0 85 0.0 86 0.0 87 0.0 88 0.0 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0373087924387514 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.012436264146250466 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 8041.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 63.17622186295237 #Duplication Level Percentage of deduplicated Percentage of total 1 83.95669291338582 53.04066658375823 2 10.196850393700787 12.883969655515484 3 3.7007874015748032 7.014052978485264 4 1.0433070866141732 2.636487999005099 5 0.37401574803149606 1.1814450938937944 6 0.3346456692913386 1.2684989429175475 7 0.1377952755905512 0.6093769431662729 8 0.07874015748031496 0.3979604526800149 9 0.03937007874015748 0.2238527546325084 >10 0.09842519685039369 1.5047879616963065 >50 0.01968503937007874 0.8581022260912822 >100 0.0 0.0 >500 0.0 0.0 >1k 0.01968503937007874 18.38079840815819 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACCATTCCGAATCTCGTATGCCGTC 1478 18.38079840815819 RNA PCR Primer, Index 46 (95% over 21bp) TTATACACATCTCCGAGCCCACGAGACCATTCCGAATCTCGTATGCCGTCT 69 0.8581022260912822 RNA PCR Primer, Index 18 (95% over 21bp) CTTATACACATCTCCGAGCCCACGAGACGACGCTATATCTCGTATGCCGTC 31 0.38552418853376447 No Hit TCTTATACACATCTCCGAGCCCACGAGACCATTCCGAATCTCGTATGCCGT 31 0.38552418853376447 No Hit CTTATACACATCTCCGAGCCCACGAGACGTCTTAGTATCTCGTATGCCGTC 23 0.28603407536376074 No Hit CTCTTATACACATCTCCGAGCCCACGAGACCATTCCGAATCTCGTATGCCG 22 0.27359781121751026 No Hit CTTATACACATCTCCGAGCCCACGAGACGATAACCTATCTCGTATGCCGTC 14 0.17410769804750653 No Hit CTGTAGGACATGGAATATGGCAAGAAAACTGAAAATCATGGAAAATGAGAA 9 0.1119263773162542 No Hit TCTAGTGGGTATCTACATGCAATATGGAATCTGGACACTTTGTGAATACCC 9 0.1119263773162542 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA Adapter Nextera Transposase Sequence 1 0.0 0.0 0.0 2 0.0 0.0 0.0 3 0.0 0.0 0.0 4 0.0 0.0 0.0 5 0.0 0.0 0.0 6 0.0 0.0 0.0 7 0.0 0.0 0.0 8 0.0 0.0 0.0 9 0.0 0.0 0.012436264146250466 10 0.0 0.0 0.012436264146250466 11 0.0 0.0 0.012436264146250466 12 0.0 0.0 0.012436264146250466 13 0.0 0.0 0.012436264146250466 14 0.0 0.0 0.012436264146250466 15 0.0 0.0 0.012436264146250466 16 0.0 0.0 0.012436264146250466 17 0.0 0.0 0.012436264146250466 18 0.0 0.0 0.09949011317000372 19 0.0 0.0 0.1119263773162542 20 0.0 0.0 0.1119263773162542 21 0.0 0.0 0.1119263773162542 22 0.0 0.0 0.12436264146250467 23 0.0 0.0 0.12436264146250467 24 0.0 0.0 0.12436264146250467 25 0.0 0.0 0.12436264146250467 26 0.0 0.0 0.1492351697550056 27 0.0 0.0 0.21141649048625794 28 0.0 0.0 0.2238527546325084 29 0.0 0.0 0.27359781121751026 30 0.0 0.0 0.4103967168262654 31 0.0 0.0 0.7213033204825271 32 0.0 0.0 1.2933714712100486 33 0.0 0.0 1.9027484143763214 34 0.0 0.0 2.823031961198856 35 0.0 0.0 3.681134187290138 36 0.0 0.0 4.875015545330183 37 0.0 0.0 6.031588110931477 38 0.0 0.0 7.387140902872777 39 0.0 0.0 8.755129958960328 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATGCC 180 0.0 45.000004 42 TATGCCG 180 0.0 45.000004 43 CTCGTAT 180 0.0 45.000004 39 AATCTCG 185 0.0 45.0 36 ATCTCGT 185 0.0 45.0 37 TGCCGTC 175 0.0 45.0 45 TTCCGAA 185 0.0 45.0 31 ATGCCGT 175 0.0 45.0 44 CGAATCT 185 0.0 45.0 34 GAATCTC 185 0.0 45.0 35 TCCGAAT 185 0.0 45.0 32 CCGAATC 185 0.0 45.0 33 ACCATTC 190 0.0 43.815792 27 TCTCGTA 190 0.0 43.815792 38 CCATTCC 190 0.0 43.815792 28 CCGAGCC 190 0.0 43.815792 14 TCTCCGA 190 0.0 43.815792 11 ATTCCGA 190 0.0 43.815792 30 TCCGAGC 190 0.0 43.815792 13 CTCCGAG 190 0.0 43.815792 12 >>END_MODULE