H23NVBCXX l02n01 48h_46.34100000006af4.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23NVBCXX l02n01 48h_46.34100000006af4.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	8041
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCATTCCGAATCTCGTATGCCGTC	1478	18.38079840815819	RNA PCR Primer, Index 46 (95% over 21bp)
TTATACACATCTCCGAGCCCACGAGACCATTCCGAATCTCGTATGCCGTCT	69	0.8581022260912822	RNA PCR Primer, Index 18 (95% over 21bp)
CTTATACACATCTCCGAGCCCACGAGACGACGCTATATCTCGTATGCCGTC	31	0.38552418853376447	No Hit
TCTTATACACATCTCCGAGCCCACGAGACCATTCCGAATCTCGTATGCCGT	31	0.38552418853376447	No Hit
CTTATACACATCTCCGAGCCCACGAGACGTCTTAGTATCTCGTATGCCGTC	23	0.28603407536376074	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCATTCCGAATCTCGTATGCCG	22	0.27359781121751026	No Hit
CTTATACACATCTCCGAGCCCACGAGACGATAACCTATCTCGTATGCCGTC	14	0.17410769804750653	No Hit
CTGTAGGACATGGAATATGGCAAGAAAACTGAAAATCATGGAAAATGAGAA	9	0.1119263773162542	No Hit
TCTAGTGGGTATCTACATGCAATATGGAATCTGGACACTTTGTGAATACCC	9	0.1119263773162542	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTATGCC	180	45.000004	42
TATGCCG	180	45.000004	43
CTCGTAT	180	45.000004	39
AATCTCG	185	45.0	36
ATCTCGT	185	45.0	37
TGCCGTC	175	45.0	45
TTCCGAA	185	45.0	31
ATGCCGT	175	45.0	44
CGAATCT	185	45.0	34
GAATCTC	185	45.0	35
TCCGAAT	185	45.0	32
CCGAATC	185	45.0	33
ACCATTC	190	43.815792	27
TCTCGTA	190	43.815792	38
CCATTCC	190	43.815792	28
CCGAGCC	190	43.815792	14
TCTCCGA	190	43.815792	11
ATTCCGA	190	43.815792	30
TCCGAGC	190	43.815792	13
CTCCGAG	190	43.815792	12