H23NVBCXX l02n01 48h_30.341000000069f5.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23NVBCXX l02n01 48h_30.341000000069f5.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	23331
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCTTGCAGAATCTCGTATGCCGTC	3954	16.947409026616945	No Hit
TTATACACATCTCCGAGCCCACGAGACCTTGCAGAATCTCGTATGCCGTCT	241	1.032960438901033	RNA PCR Primer, Index 40 (95% over 21bp)
TCTTATACACATCTCCGAGCCCACGAGACCTTGCAGAATCTCGTATGCCGT	180	0.7715057220007715	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCTTGCAGAATCTCGTATGCCG	73	0.3128884317003129	No Hit
GTATCAACGCAGAGTACTTTTTCTGTCTCTTATACACATCTCCGAGCCCAC	41	0.17573185890017573	No Hit
AAAAAGTACTCTGCGTTGATACCACCTGTCTCTTATACACATCTCCGAGCC	36	0.1543011444001543	No Hit
AAAAAGTACTCTGCGTTGATACCTGTCTCTTATACACATCTCCGAGCCCAC	33	0.14144271570014144	No Hit
CTTATACACATCTCCGAGCCCACGAGACGACGCTATATCTCGTATGCCGTC	32	0.13715657280013716	No Hit
CTGTAGGACGTGGAATATGGCAAGAAAACTGAAAATCATGGAAAATGAGAA	31	0.13287042990013287	No Hit
GTCCTAAAGTGTGTATTTCTCATTTTCCGTGATTTTCAGTTTTCTCGCCAT	26	0.11143971540011144	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATCTCG	20	6.893415E-4	44.997856	36
CGAGACG	20	6.893415E-4	44.997856	23
GAGACGA	20	6.893415E-4	44.997856	24
GCCGTCT	50	9.877112E-10	40.49807	45
TGCCGTC	475	0.0	40.26124	45
ATCTCGT	510	0.0	38.380524	37
TCTCGTA	510	0.0	38.380524	38
CTCGTAT	510	0.0	38.380524	39
CCTTGCA	495	0.0	38.179996	28
GCAGAAT	495	0.0	38.179996	32
ACCTTGC	495	0.0	38.179996	27
AATCTCG	490	0.0	38.110428	36
CCACGAG	520	0.0	38.075108	20
CACGAGA	520	0.0	38.075108	21
TATGCCG	515	0.0	38.007896	43
CCCACGA	515	0.0	38.007896	19
CGTATGC	515	0.0	38.007896	41
ATGCCGT	510	0.0	37.93937	44
TGCAGAA	505	0.0	37.869484	31
TTGCAGA	500	0.0	37.7982	30