H23NVBCXX l02n01 48h_29.341000000069e8.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23NVBCXX l02n01 48h_29.341000000069e8.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	108410
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCTTGCAGAATCTCGTATGCCGTC	3018	2.7838760261968454	No Hit
CTGTAGGACGTGGAATATGGCAAGAAAACTGAAAATCATGGAAAATGAGAA	478	0.44091873443409285	No Hit
GTCCTAAAGTGTGTATTTCTCATTTTCCGTGATTTTCAGTTTTCTCGCCAT	255	0.2352181533068905	No Hit
TTATACACATCTCCGAGCCCACGAGACCTTGCAGAATCTCGTATGCCGTCT	237	0.21861451895581588	RNA PCR Primer, Index 40 (95% over 21bp)
GTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGCC	184	0.16972604003320726	No Hit
CTTTAGGACGTGAAATATGGCGAGGAAAACTGAAAAAGGTGGAAAATTTAG	138	0.12729453002490546	No Hit
TCTTATACACATCTCCGAGCCCACGAGACCTTGCAGAATCTCGTATGCCGT	118	0.1088460474126003	No Hit
CTGAAGGACCTGGAATATGGCGAGAAAACTGAAAATCACGGAAAATGAGAA	110	0.10146665436767827	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCCGTCT	35	1.1984594E-7	44.99954	45
TGCCGTC	365	0.0	40.068085	45
TCGTATG	395	0.0	37.59455	40
ACGAGAC	395	0.0	37.59455	22
CCACGAG	395	0.0	37.59455	20
TATGCCG	390	0.0	37.499615	43
CGAGACC	385	0.0	37.402214	23
CTCGTAT	400	0.0	37.12462	39
CCCACGA	400	0.0	37.12462	19
ATGCCGT	395	0.0	37.024937	44
AATCTCG	390	0.0	36.9227	36
GAGACCT	385	0.0	36.817806	24
CTTGCAG	385	0.0	36.817806	29
GCAGAAT	385	0.0	36.817806	32
ATCTCGT	405	0.0	36.66629	37
GCCCACG	405	0.0	36.66629	18
CACGAGA	405	0.0	36.66629	21
CGAGCCC	405	0.0	36.66629	15
CGTATGC	400	0.0	36.562126	41
GTATGCC	400	0.0	36.562126	42