H23NVBCXX l02n01 48h_27.341000000069ce.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23NVBCXX l02n01 48h_27.341000000069ce.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	84285
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCTTGCAGAATCTCGTATGCCGTC	1462	1.7345909711099246	No Hit
CTGTAGGACGTGGAATATGGCAAGAAAACTGAAAATCATGGAAAATGAGAA	307	0.36424037491843153	No Hit
GTCCTAAAGTGTGTATTTCTCATTTTCCGTGATTTTCAGTTTTCTCGCCAT	202	0.2396630479919321	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	163	0.19339146941923238	No Hit
TTATACACATCTCCGAGCCCACGAGACCTTGCAGAATCTCGTATGCCGTCT	129	0.15305214450969926	RNA PCR Primer, Index 40 (95% over 21bp)
GAATATGGCAAGAAAACTGAAAATCATGGAAAATGAGAAACATCCACTTGA	129	0.15305214450969926	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	102	0.1210179747285994	No Hit
GTCCTACAGTGTGCATTTCTCATTTTTCACGTTTTTCAGTGATTTCGTCAT	95	0.11271281960016612	No Hit
GTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGCC	90	0.10678056593699946	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGCCGTC	140	0.0	38.571426	45
GCCCACG	150	0.0	37.500004	18
CTCCGAG	150	0.0	37.500004	12
CCCACGA	150	0.0	37.500004	19
CGAGCCC	150	0.0	37.500004	15
TCTCCGA	150	0.0	37.500004	11
CCACGAG	150	0.0	37.500004	20
GACCTTG	150	0.0	37.500004	26
CATACAC	30	1.13096714E-4	37.499996	5
CTCGTAT	140	0.0	36.964283	39
TCTCGTA	140	0.0	36.964283	38
ATCTCCG	155	0.0	36.29032	10
TCCGAGC	155	0.0	36.29032	13
CACGAGA	155	0.0	36.29032	21
CCGAGCC	155	0.0	36.29032	14
CGAGACC	155	0.0	36.29032	23
ACGAGAC	155	0.0	36.29032	22
ACCTTGC	155	0.0	36.29032	27
GTCTTAA	25	0.002096068	36.0	1
GCCGTCT	25	0.002096068	36.0	45