Basic Statistics
Measure | Value |
---|---|
Filename | H23NVBCXX l02n01 36h_91.341000000061c6.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 438025 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 47 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CTTATACACATCTCCGAGCCCACGAGACCCTGGATAATCTCGTATGCCGTC | 1617 | 0.3691570115860967 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CTCGTAT | 220 | 0.0 | 40.90805 | 39 |
TATGCCG | 225 | 0.0 | 38.99901 | 43 |
TGCCGTC | 225 | 0.0 | 38.99901 | 45 |
TCTCGTA | 235 | 0.0 | 38.2969 | 38 |
CGAGCCC | 235 | 0.0 | 38.2969 | 15 |
CGTATGC | 245 | 0.0 | 37.652103 | 41 |
AATCTCG | 240 | 0.0 | 37.49905 | 36 |
ATGCCGT | 250 | 0.0 | 35.99909 | 44 |
ACGAGAC | 250 | 0.0 | 35.99909 | 22 |
CCCACGA | 255 | 0.0 | 35.293224 | 19 |
CGAGACC | 250 | 0.0 | 35.09911 | 23 |
TCGTATG | 280 | 0.0 | 34.552696 | 40 |
GATAATC | 255 | 0.0 | 34.410892 | 33 |
CACGAGA | 265 | 0.0 | 33.961403 | 21 |
GCCCACG | 275 | 0.0 | 32.72644 | 18 |
TCTCCGA | 280 | 0.0 | 32.145714 | 11 |
ATCTCGT | 280 | 0.0 | 32.142044 | 37 |
GGATAAT | 275 | 0.0 | 31.90828 | 32 |
GTATGCC | 285 | 0.0 | 31.578148 | 42 |
ATCTCCG | 290 | 0.0 | 31.037241 | 10 |