H23NVBCXX l02n01 36h_46.34100000005e97.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23NVBCXX l02n01 36h_46.34100000005e97.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	269527
Sequences flagged as poor quality	0
Sequence length	51
%GC	38

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCATTCCGAATCTCGTATGCCGTC	3829	1.4206368935208717	RNA PCR Primer, Index 46 (95% over 21bp)
CTGTAGGACGTGGAATATGGCAAGAAAACTGAAAATCATGGAAAATGAGAA	1044	0.3873452381394072	No Hit
GTCCTAAAGTGTGTATTTCTCATTTTCCGTGATTTTCAGTTTTCTCGCCAT	727	0.2697317893940125	No Hit
GTCCTACAGTGTGCATTTCTCATTTTTCACGTTTTTCAGTGATTTCGTCAT	520	0.19293057838361277	No Hit
GTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGCC	396	0.14692405584598203	No Hit
GAATATGGCAAGAAAACTGAAAATCATGGAAAATGAGAAACATCCACTTGA	385	0.14284283207248255	No Hit
CTTTAGGACGTGAAATATGGCGAGGAAAACTGAAAAAGGTGGAAAATTTAG	336	0.12466283526325748	No Hit
TTATACACATCTCCGAGCCCACGAGACCATTCCGAATCTCGTATGCCGTCT	304	0.1127901842858044	RNA PCR Primer, Index 18 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TGCCGTC	560	40.177082	45
ATGCCGT	565	39.821533	44
AATCTCG	560	38.971767	36
CTCGTAT	580	38.791664	39
TCTCGTA	580	38.791664	38
TCCGAAT	570	38.682774	32
TTCCGAA	565	38.626884	31
TATGCCG	590	38.51552	43
TCGTATG	590	38.51552	40
ATTCCGA	570	38.28805	30
CCGAATC	570	38.28805	33
CCCACGA	595	38.19186	19
ATCTCGT	590	38.134174	37
CGAGACC	575	37.955116	23
CATTCCG	570	37.89333	29
GCCCACG	600	37.880623	18
CCACGAG	600	37.873596	20
CGAATCT	580	37.627914	34
ACGAGAC	605	37.56059	22
CCGAGCC	615	36.956707	14