H23NVBCXX l02n01 36h_44.34100000005e7d.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23NVBCXX l02n01 36h_44.34100000005e7d.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	142576
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCATTCCGAATCTCGTATGCCGTC	2751	1.9294972505891592	RNA PCR Primer, Index 46 (95% over 21bp)
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1249	0.8760240152620357	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1056	0.7406576141847155	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	699	0.49026484120749636	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	506	0.3548984401301762	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	506	0.3548984401301762	No Hit
GCGTTGATACCACTGCTTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	335	0.2349624060150376	No Hit
TTATACACATCTCCGAGCCCACGAGACCATTCCGAATCTCGTATGCCGTCT	263	0.18446302322971608	RNA PCR Primer, Index 18 (95% over 21bp)
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	206	0.14448434519133657	No Hit
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	202	0.14167882392548536	No Hit
ATACCACTGCTTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	201	0.14097744360902253	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	199	0.13957468297609696	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	176	0.12344293569745259	No Hit
GCTTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	151	0.10590842778588261	No Hit
CAGTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	151	0.10590842778588261	No Hit
GCGTTGATACCACTGCTTCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	146	0.10240152620356863	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TGCCGTC	270	42.49967	45
CTCGTAT	285	40.262844	39
TATGCCG	285	40.262844	43
TCTCGTA	285	40.262844	38
AATCTCG	285	40.262844	36
TCGTATG	285	40.262844	40
ATGCCGT	285	40.262844	44
ATTCCGA	280	40.178257	30
GTATGCC	295	39.660706	42
CTCCGAG	290	39.568657	12
CGAATCT	290	39.568657	34
CCGAATC	290	39.568657	33
CATTCCG	285	39.473377	29
ATCTCGT	295	38.898003	37
CGTATGC	295	38.898003	41
TCTCCGA	295	38.898003	11
TTCCGAA	290	38.7928	31
GACCATT	290	38.7928	26
TCCGAGC	300	38.249702	13
CGAGACC	300	38.249702	23