H23NVBCXX l02n01 36h_41.34100000005e3a.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23NVBCXX l02n01 36h_41.34100000005e3a.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3600
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCATTCCGAATCTCGTATGCCGTC	2123	58.97222222222223	RNA PCR Primer, Index 46 (95% over 21bp)
TTATACACATCTCCGAGCCCACGAGACCATTCCGAATCTCGTATGCCGTCT	145	4.027777777777778	RNA PCR Primer, Index 18 (95% over 21bp)
TCTTATACACATCTCCGAGCCCACGAGACCATTCCGAATCTCGTATGCCGT	81	2.25	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCATTCCGAATCTCGTATGCCG	27	0.75	No Hit
ATACACATCTCCGAGCCCACGAGACCATTCCGAATCTCGTATGCCGTCTTC	11	0.3055555555555556	RNA PCR Primer, Index 46 (95% over 24bp)
CTTATACACATCTCCGAGCCCACGAGACGATCGTGTATCTCGTATGCCGTC	9	0.25	No Hit
CTTATACACATCTCCGAGCCCACGAGACGACGCTATATCTCGTATGCCGTC	9	0.25	No Hit
CTTATACACATCTCCGAGCCCACGAGACGTCTTAGTATCTCGTATGCCGTC	7	0.19444444444444445	No Hit
CTTATACACATCTCCGAGCCCACGAGACGATAACCTATCTCGTATGCCGTC	6	0.16666666666666669	No Hit
CTTATACACATCTCCGAGCCCACGAGACTACTTGCAATCTCGTATGCCGTC	6	0.16666666666666669	TruSeq Adapter, Index 12 (95% over 21bp)
CTTATACACATCTCCGAGCCCACGAGACGAATTGCTATCTCGTATGCCGTC	5	0.1388888888888889	RNA PCR Primer, Index 27 (95% over 21bp)
CTTATACACATCTCCGAGCCCACGAGACCATTCCGAATATCGTATGCCGTC	5	0.1388888888888889	No Hit
GTATCTCATTGTGGTTTTGATTTGCATTTCTTTGATGGCCAGTGATGATGA	4	0.1111111111111111	No Hit
TATACACATCTCCGAGCCCACGAGACCATTCCGAATCTCGTATGCCGTCTT	4	0.1111111111111111	RNA PCR Primer, Index 46 (95% over 23bp)
CTTATACACATCTCCGAGCCCACGAGACCATTCCGAATTTCGTATGCCGTC	4	0.1111111111111111	No Hit
CGGAGATGTGTATAAGAGACAGCTTATACACATCTCCGAGCCCACGAGACC	4	0.1111111111111111	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CTTATAC	200	41.625	1
TGCCGTC	210	40.714287	45
TATGCCG	210	40.714287	43
TCTCGTA	210	40.714287	38
ATGCCGT	210	40.714287	44
CGTATGC	210	40.714287	41
TCGTATG	210	40.714287	40
CTCGTAT	210	40.714287	39
ATCTCGT	205	40.609756	37
AATCTCG	200	40.5	36
ACCATTC	195	40.384617	27
CATTCCG	195	40.384617	29
CCATTCC	195	40.384617	28
AGACCAT	195	40.384617	25
GACCATT	195	40.384617	26
GAGACCA	195	40.384617	24
TTCCGAA	190	40.26316	31
CGAATCT	190	40.26316	34
GAATCTC	190	40.26316	35
ATTCCGA	190	40.26316	30