FastQCFastQC Report
Thu 9 Apr 2015
H23NVBCXX l02n01 30h_49.34100000005866.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH23NVBCXX l02n01 30h_49.34100000005866.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3261
Sequences flagged as poor quality0
Sequence length51
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACGATCGTGTATCTCGTATGCCGTC46114.136767862618829No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGATCGTGTATCTCGTATGCCG1775.427782888684453No Hit
TCTTATACACATCTCCGAGCCCACGAGACGATCGTGTATCTCGTATGCCGT461.4106102422569764No Hit
TGCTGATGCTGTGGGTTTGGGACGAATTGAGTTACGATACTTTCAATACCA260.7973014412756823No Hit
GCATTGATCATTCTGGATATTATGCTTCCGGGTATGGATGGCTGGCAGATC260.7973014412756823No Hit
AAGATGTTCACCGGAATCGCTACCAATCTGGAATAAAAAGACTGTTCGAAG230.7053051211284882No Hit
CGTCAGATGTGTATAAGAGACAGACCCATTACGCCGTCAGGACCAGCAAAC230.7053051211284882No Hit
GTTAATCGAGGCGTTTCTATACTCCTTCCTAAGAGCACCAGGTGGGGACAC180.5519779208831647No Hit
GCATGAATCATGGTCAACATACAAACAACATTGGGAGCAACAGCTTAGTTT180.5519779208831647No Hit
TGAGAGCACAATGCCTATGCGCAAATCTTTGCCGTTTAAATCTACTGCCAG170.5213124808341No Hit
GACAAGAAGAATGCCAAATCCCATACCTGAACTCCTTGGAGCCAAGGATCT160.4906470407850353No Hit
GTTATACCCCGATTGTTCTTGCCAAGAAAAAACTTTGGGTCAAACTCAAAG150.45998160073597055No Hit
CCTTCCTCACTGTCAAGAAGCAGATGGAAGAACTAACCGTCAGTGAATTCT150.45998160073597055No Hit
CATCCTGTCTCTTATACACATCTCCGAGCCCACGAGACGATCGTGTATCTC150.45998160073597055No Hit
CATCGAGACTCGACTGACCGATGACTCTCTGACCTATCTAAAAACGCTACC130.3986507206378411No Hit
CTCTTTCCCCAGGAGCCTTTCCTCTGGACCTTCTTCCCATCATCATCCTAT130.3986507206378411No Hit
GTGTAAAAGCTATGACGGCATTTCTATTGAAAAGGATTTGACAACACAACT130.3986507206378411No Hit
GTCTCTTATACACATCTCCGAGCCCACGAGACGATCGTGTATCTCGTATGC120.36798528058877644No Hit
ATGTTTATGAGCTAATGGTTGCATGCTTAAGCGGTTGTCGGTTGATATTCG120.36798528058877644No Hit
GACCCCCACAGGTCCTGTCAGAGAACACTGTCCCTTCATCACTTCCTTATT120.36798528058877644No Hit
GCTGAAATTTTGTTAGATGTGCATCATTGTTCAAGGCTCCTCCTGCTCAAT110.33731984053971176No Hit
GGATAGTGGGTTTACAATCTGAGCAGGTGCGCGTGAAATATTTGTCAAAAT110.33731984053971176No Hit
GTATTTGAAAATTGCTTGGCCAGAATTGACTAAAAAAACTGAACTGATACC110.33731984053971176No Hit
GTGTATAAGAGACAGAGCATAGACTGCGCACCCATACTTCTCCTATTGATT110.33731984053971176No Hit
CTGATATCAAGGCGCTGTACTCCACGGCATTTGAGGTCTGTCTCTTATACA100.306654400490647No Hit
GACGGTAGCCGTTGAAGAATGGTGTATGACGACCACCTTCATCTTTACCCA100.306654400490647No Hit
CCTCCTCTCTGGTTCTTTTTCCTTTTTCTTTCAGATGTGCTCGTGTTCGTT100.306654400490647No Hit
CCCCACATGTCAAGGGTGGGACCAGGTGGAGATAATTGAATCATAGGGGTG100.306654400490647No Hit
CAGTATATGAGGGCAGGAGAAGGATTCATCATCTGTTACTCCATCACGGAT100.306654400490647No Hit
GTTGAAAAGTTACGCAACGTTCTTGTCCCTATTCCTAAGCAGCAAGAGGCG100.306654400490647No Hit
GATCCAGCTCTTTGACAACGACAAAAGCATAGGTTCCTGGCTTTAAAGGTT90.27598896044158233No Hit
AAGAGACAGTGTCATCATCGGTCAGATCCTTGACCATCTCCTTCAGCTCAG90.27598896044158233No Hit
CAGTTGTCTTAATCGTCTTTTGAGTACCTACTTTAACCACTTCTTCTACAG90.27598896044158233No Hit
CTTATACACATCTCCGAGCCCACGAGACAGTGTCTTATCTCGTATGCCGTC80.24532352039251765No Hit
GATATTGACAGATTCCCGTTCCACCCTTCCTCATCCCTGTCTCTTATACAC80.24532352039251765No Hit
GTATTGCCCCGTACCGATGGAGTTACCTGATGAAGAAGCTTGCACTGCTTC80.24532352039251765No Hit
GGTTATGGAGGAAGCTTCTTCTTGTGGGTTTCTACTTTGATAGATTGTGTT80.24532352039251765No Hit
GCCTCAAGTGTCGAATTCTGTTTTCGTTTGATCTCAAATTGTGTCGATTTC80.24532352039251765No Hit
CCTCTTTGATTTGTAGCGCAGGAAATTCTGAAGTAACATCCTCCTGTCTCT80.24532352039251765No Hit
ACAAAAAACAGACCCTGGCCGTTGCCAGAATGCAGACTAAATGCTGTCTCT70.21465808034345293No Hit
ATGATGTGCAGAGCCAATTGCTCAAAGATATCTAAGTGAGACGCTGCCGCT70.21465808034345293No Hit
ACTTCCTGAAATCCTCTGAGGAAGAAGGGATTTCTTCGTCACTGTCTCTTA70.21465808034345293No Hit
GGGCAGAGATTTAGGCATCAGAATCGAAAAAGAAAATTCTCCTGGTGATTC70.21465808034345293No Hit
CTTATACACATCTCCGAGCCCACGAGACGATAACCTATCTCGTATGCCGTC70.21465808034345293No Hit
TGTAATCCCAGCTACTTGGGAGCTGAGGTAGGAGAATCGTTTGCTGTCTCT70.21465808034345293No Hit
ATAAGAGACAGCGTAAAAAGATGGCTTCAACGCGCCCGGTTTTAGAAAAAT70.21465808034345293No Hit
GCGGTAATTTCTATGGCTTTTTCAACCTGGCAGTAGCTCAGTAGCTGTCTC70.21465808034345293No Hit
CAGCATCCCTATGAACAATTTCTATTGGCTCTTTTGCGCCCAAGGAAATTG70.21465808034345293No Hit
GTAGGTAGCTGCTGTCCTTCGTAAATCGTGAATCCGTATATCATCAATGCC70.21465808034345293No Hit
GGTGAAACATCCGCTTACGACGGAAAGTGCGATGAAAAAGATCGAAGACAA70.21465808034345293No Hit
AAAGAGCTGGGACTACGCAAGTTGAAGTTCAGCGAATGTGATGCTGTCTCT70.21465808034345293No Hit
ACCAATACAAGGTTTGCTATCAAGTGAATTATCACAGTGGGTATCTGAAAC70.21465808034345293No Hit
AGGCAATCGCTGGTAAAGCCTGGGCAGATGACATCAATACGTTTTGTGTTG70.21465808034345293No Hit
GCTGTCTCTTATACACATCTCCGAGCCCACGAGACGATCGTGTATCTCGTA70.21465808034345293No Hit
ACGTATTTAGACTCAACTGGCTCGTATGTCATACATACGTGGTTCAATGGT60.18399264029438822No Hit
CTCTGAAGCCTGAGCAGACATCAATACCGCAGTATGCAGACTGTCTCTTAT60.18399264029438822No Hit
TGCTCATGCAAGGCACTGAAGAGTTGACGACTATGATGAACAAAGCGCTTA60.18399264029438822No Hit
GACCAATCATGATCGATGATTTCGTCGGGATATCCGGTTGCTGTCTCTTAT60.18399264029438822No Hit
AAACAACCCAGACGTCAGCTAAGGTCCCAAAGTTATGGTTAAGTGGGAAAC60.18399264029438822No Hit
GAAGCTTATAGCTAACACCGCAATCAATTTTTTCACTCGTCTAGGGTCTGT60.18399264029438822No Hit
TGATACCTCCAGCAAGCTTCTCAACTCACCTTCACAGGCTTACAGAACGCT60.18399264029438822No Hit
CCACTGGATGGAAAACATTCGCGACTGGAATATTTCAAGGCAATTATGGTG60.18399264029438822No Hit
GGGCTTATTGGATGCGGTGGATTATTTAGACCACAAAATGCGCGAAATTCG60.18399264029438822No Hit
CTCATGTCATGTATGGAGGTCTGGAGTGGTATTATGGGATTACAAGGTTAT60.18399264029438822No Hit
GTTGAATCGTAACGGCTTCCAAACGACACTGCATGAGCTGTCTCTTATACA60.18399264029438822No Hit
CATCAAAACCATATCATGGAGATTTCTCATTTTCTCTAGGGCCCTGGTGAT60.18399264029438822No Hit
GCTTCATGTCCTGACAGATTCACTAAGCATTCCATCCAGTCTCCTGTGAGG60.18399264029438822No Hit
AGACAGCACTTGCACCGGTGAGGTATGGGTACGTAATACCTGTCTCTTATA60.18399264029438822No Hit
GATCAATGTTTTCCATATTGCAAACGATCATGGCATTGTTCTGTTGATCCC60.18399264029438822No Hit
CCTTCACTGGTTACACTGGACCTTTTGACATCTTCTTGGGCTGCTCTGGTG60.18399264029438822No Hit
GTGTATTTACAATCCCTCAGCTAGACATAAAGGTTCTCCAAGTCCTGTCTC50.1533272002453235No Hit
GTGTATCCACTGTGCTCAGGGCACTTCTAAGCATCTTACACACAATATCTC50.1533272002453235No Hit
GGTTAGGTAGCACTGTTCGTGATCTCATCAAGTACAGGTCTAGGAGTGATA50.1533272002453235No Hit
GTTGGGAGTCGCACGGTTTCTCAGAAAAGGATCCAGTAGTAGCATTAACCG50.1533272002453235No Hit
AACTGAATGTCAGGCAATTTGAATTCGGTTTCCTGGCGCAGTTTTTCGCGC50.1533272002453235No Hit
CTCTTCCTCTGCCTCATCATCACTGATCTCCTTCTGTCTCTTATACACATC50.1533272002453235No Hit
TCTCAGACAGATCCACGTCGTACCAACCGGTGAAACGGTTTTCTTTGTTCC50.1533272002453235No Hit
GACATTTCCGATACGTGTACGAGGCCTTCAACCTGTCTCTTATACACATCT50.1533272002453235No Hit
GAGGAAGATGCTGATGAGGTAGACAAAGAATGTCTCCTGTCTCTTATACAC50.1533272002453235No Hit
GTCAGGCTCTCATATCGAATCTTGTCCAGGGCATCTGAAGCATTAGAGATC50.1533272002453235No Hit
ATATCCCCATGTTGATGTTCCTGAAGGCGAAGTCCGTTTAGAAGTTAACCA50.1533272002453235No Hit
GCATCCATGAGATTCCTGGCGTGCCGACTAACTTCTCCCAGGTGATTCAGG50.1533272002453235No Hit
CAGTGAGATTGGTGAGATCGGGGATCAGGTCGGTCTGTCTCTTATACACAT50.1533272002453235No Hit
GCTCATACGAATGCGTACCGTATCTCGTCACTCTCTGATTTAAAACTCGAG50.1533272002453235No Hit
ACTCAATCCGAAGATGGAAGTCTTCCAAGAACTGGAGGCTGTCTCTTATAC50.1533272002453235No Hit
CTTATACACATCTCCGAGCCCACGAGACGAATTGCTATCTCGTATGCCGTC50.1533272002453235RNA PCR Primer, Index 27 (95% over 21bp)
ACGTTAATCAAAGTATTGCTTGGCATCATGCAACCCAACGCGGGCAAAGTC50.1533272002453235No Hit
AACCGACATTGAGCTGGTTCGGCAGTTCATAATGCCTGTCTCTTATACACA50.1533272002453235No Hit
GGCAATGCCCATTACAATCATCTTCTCAATCACGCCTTAAATCCTGTCTCT50.1533272002453235No Hit
AGCTTCACGATGCTGCCTGGTGGATACACACCCTGTCTCTTATACACATCT50.1533272002453235No Hit
TAAGAAGGTAGCACGAATACCAAAAAAGCTAGAAACCCAAATAGTGCACCT50.1533272002453235No Hit
GCCCTGATCGAGGCCTTGTATCACCGAATTTCTGCGATTGATGAACGCAGT50.1533272002453235No Hit
GGCTCGTCTTGTTGCGCGGCATCAGGATTTTGTACTTGCTGCATATACAGG50.1533272002453235No Hit
ATTCAGCCTGATTTAAGCATCACCATTTAATCGTCACTAGTGCAGCACTTG50.1533272002453235No Hit
CAGGTGAGTTCCCTGATGAAGATGAACTTGAAGCCGTTGCTGAAAGTCTGG50.1533272002453235No Hit
GAGTACGGGGCAACATCAAGGAGGTGAAGGCCTGTCTCTTATACACATCTC50.1533272002453235No Hit
GTCATTGACGGTAGCTGACGATGGGTATAGGCTGTCTCTTATACACATCTC50.1533272002453235No Hit
CCGACCTCTACTAGATTCCGAACGTGACCAACTACGTCATGTTCACCAACT50.1533272002453235No Hit
CTTCTGGCATGATTGCAAAAGCTTGTTGTCGCCTGTCTCTTATACACATCT50.1533272002453235No Hit
AGATTGTGGCGAATGTCGTTTACGTACTCACCAACGAGGCAATGCCAGGAA50.1533272002453235No Hit
ATTTTAGACACTCTGCAAAAGGATGGCCGGATTTCCAATGTCGAACTGGCC50.1533272002453235No Hit
GTGGCTACCTCTCTTTGGTTTTGTGGCTTTGCTCTATTGTGACGCTGTCTC50.1533272002453235No Hit
CGTTGATACCACCCCGTACTCTGCGTTGATACTGCTGTCTCTTATACACAT40.12266176019625882No Hit
ACCCATTACGCCGTCAGGACCAGCAAACATAGTCAAAGTAGCACCAACCCA40.12266176019625882No Hit
TTAATCCCCATGCAAGAAGCGAATGACGGCGCGGTGGATTATTACGAATCT40.12266176019625882No Hit
ATTCGATCACATGTCGGTACAGGCCCATGTCTGTCTGTCTCTTATACACAT40.12266176019625882No Hit
CAGGATGCGTGTCTCGTTGCTGTCTCTTATACACATCTCCGAGCCCACGAG40.12266176019625882No Hit
ACGTTAATGAGTTGGCCTACGAAGAGTTCATCACCAAAGATTCCTGTCTCT40.12266176019625882No Hit
AGCAAACGCAGAGCATTGCCACAGTTCTTTTAGCCCTGTCTCTTATACACA40.12266176019625882No Hit
GCATATGTGTCGTCGCTGACCTCAAGATAAAGCCTATTGAACTTTGCTCGC40.12266176019625882No Hit
GGATTGTTCCATCACATACTGGCTGTGTGGCAGAGTGGTTACTGTCTCTTA40.12266176019625882No Hit
GAAGAGAGACCAAAGAGCTCCCTTTCTGTCTCTCTCTCTCTCTCTGTCCCC40.12266176019625882No Hit
GCTTATTCTATGCATCTTGCTGGCCGTGTGTGTCTCTGTCTCTTATACACA40.12266176019625882No Hit
GTGATGGACAGCGTGACATTGGGTGTGGACAAGTTCTGTCTCTTATACACA40.12266176019625882No Hit
ACAGCACACACAACAGGTAAAGCAGCGTAATGACAGCCACACCCAGTGCAG40.12266176019625882No Hit
ATACGTAAAGAATCGCGCCTTGTGTCCGTAAATCTCCTGAAAGTGCTGTCT40.12266176019625882No Hit
GAACAGCTCATCGTCGAGCTCTACTCGAAGTAATCTGATCGCATTAGTGAC40.12266176019625882No Hit
CAATAATCGCATCCGCAATTGACCGATCTAACACTCTGTCTCTTATACACA40.12266176019625882No Hit
GCTGCTGACATGTACTCTGAAGGCTTGATTCTGTCTCTTATACACATCTCC40.12266176019625882No Hit
AATCTGGACTGGACGTATTTATGACCAGGAATGGGATCGTATTACCCTGTC40.12266176019625882No Hit
GTCCAATGTCAGTATTTATCACCGGGTACGGCTGTCTCTTATACACATCTC40.12266176019625882No Hit
CGTCTACAACGACCATCATTGTGGCGTTGGGAACGTCGATTCCTACTCTGT40.12266176019625882No Hit
CGCCTATGCAACATCACGGCACACTGTCTCTTATACACATCTCCGAGCCCA40.12266176019625882No Hit
GGGCAATGGTGGAAGAGTTTCGAGTATAGCTTTCGGTCTCTGTCTCTTATA40.12266176019625882No Hit
ATCATGGTTCAATGCAACCTCAATCTCCTGAGCTCAAGCGATCCTGCCACT40.12266176019625882No Hit
GACCCAGAGTATGCCAAGGACAAAGGAGGGGCTGTCTCTTATACACATCTC40.12266176019625882No Hit
CACCAGCTGAAGCCTAAGAGTACGAGCTGTCTCTTATACACATCTCCGAGC40.12266176019625882No Hit
TTGATACGCATGCTGGTGCGGGAAAATATGATTTATCTCTGGCACCCTGTC40.12266176019625882No Hit
GGCTTTTAAACTGTCAGTGGTCGATCAGGTAGAAAAAGGCGAATTAAGCTA40.12266176019625882No Hit
ATGCTGGGGCAGCGTGATTTCCTGGATGTGCCATTTAATGTAACCAATTAT40.12266176019625882No Hit
CTCCAAATCGGCGATGGAGTTCGAGTTTCAACCCTGTCTCTTATACACATC40.12266176019625882No Hit
TGCTACCACTGTTGGTGATGCAACCACGTTTACAATAGTGTCTGCTGAAGT40.12266176019625882No Hit
TGTCTGCACATGAGATGGGTTTCCTGAATACAGCACACTGATGCTGTCTCT40.12266176019625882No Hit
AGCGTCAGATGTGTATAAGAGACAGGGTATGACCGCTGTCTCTTATACACA40.12266176019625882No Hit
GCCTTATCCACCCGAATGTGACGATCTATGACCACACAGTGATAGGCTGTC40.12266176019625882No Hit
TGTTCTGGCAGTTTATTACAGAATCGCTGGTAGTGTTCATTCTGTCTCTTA40.12266176019625882No Hit
GGTAAAGGAAGTGCTAGTGAACAAAGATAGAATAGTAGCAGCAGCAGTAAT40.12266176019625882No Hit
CATACTATCGGTAATATTACTGCAAGGTACAAAGCCCTGTCTCTTATACAC40.12266176019625882No Hit
CTTGGAAACACTGAAATCGTTTTATATGAATCAAGGGTACCTAGAGTTTGC40.12266176019625882No Hit
CTCCAACACCAGCGTTTAAAATCGGCGAAAAAATTGAGGATCCCATGACAA40.12266176019625882No Hit
GATGATAGACGAGGCGGTGAATGAAATCTGTCTCTTATACACATCTCCGAG40.12266176019625882No Hit
ACCTTATCCATACCGGTAAAGCTGAGCTTAAATGTTTGTTCCTGCTGAGAT40.12266176019625882No Hit
GTGATGAGGTGATTGAAATAACGGGCAATGCCTGAGTACTGTAACTTCAGC40.12266176019625882No Hit
GCTCTGCTTTTCTGGAGTTCAAATTCGCATTCATGACTGTCTCTTATACAC40.12266176019625882No Hit
GGGTCAACCTCCTTGAGAAAGATGTTCCTAAAGCCTGTCTCTTATACACAT40.12266176019625882No Hit
GCGGATCTCTGTCTCTTATACACATCTCCGAGCCCACGAGACGATCGTGTA40.12266176019625882No Hit
GTATAAGAGACAGGCCGTGGTACTTGAAGCCAGAACCTGTCTCTTATACAC40.12266176019625882No Hit
ACATTGCCTTTTGTTTCTTAAGGTTAGGGCAACTTGATTCAGCACGATTTT40.12266176019625882No Hit
CTTATACACATCTCCGAGCCCACGAGACTTGCTGGAATCTCGTATGCCGTC40.12266176019625882No Hit
CCACATGTGTACACACACACACACGTACACTCACCTGTCTCTTATACACAT40.12266176019625882No Hit
GTTCATCTGAGGGGCCAAGAAAGGCAAAGAGACCTATCTTGTTGGCTGTCT40.12266176019625882No Hit
CATTAGTACAGAGCACTTGTTTCTTGCGGCATTTGATAACAACCTGTCTCT40.12266176019625882No Hit
GTTGGATGGTTGTGTACTGAACATGTACAGACTTCTGTCTCTTATACACAT40.12266176019625882No Hit
GAGCGCTACACCCAAATCTAAAATGCGCAAACGCTGGTCGGAGCCAATATG40.12266176019625882No Hit
AGTTAGAACCGCGAAGAAGTTTTCTTTCAAAAATCCCAGGCTTCTTCTTGA40.12266176019625882No Hit
GTATACTCTGGGCCATCCTGAACAGGATCATCATCAACAAAAGCATAGAAA40.12266176019625882No Hit
CACTACGACTCCCAGGGATACCAGCGATGCAAAGACTGTCTCTTATACACA40.12266176019625882No Hit
AGTTAGTTAAGTCACCACACAAATTCAGGAGGAACTCGAACTGTCTCTTAT40.12266176019625882No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGCCGTC451.9099389E-1045.045
ATGCCGT451.9099389E-1045.044
ATCTCGT757.3305273E-1030.037
TCTCGTA757.3305273E-1030.038
TATCTCG757.3305273E-1030.036
CGTATGC757.3305273E-1030.041
TCGTATG757.3305273E-1030.040
CTCGTAT757.3305273E-1030.039
GTATGCC701.4562829E-828.92857442
GTGTATC701.4562829E-828.92857433
TATGCCG701.4562829E-828.92857443
GTATCTC701.4562829E-828.92857435
TGTATCT701.4562829E-828.92857434
CGTGTAT752.8539944E-827.032
AGCCCAC852.8103386E-926.47058717
GCCCACG852.8103386E-926.47058718
CCACGAG852.8103386E-926.47058720
GAGCCCA852.8103386E-926.47058716
CACGAGA852.8103386E-926.47058721
CCCACGA852.8103386E-926.47058719