H23NVBCXX l02n01 24h_84.34100000006757.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23NVBCXX l02n01 24h_84.34100000006757.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	28812
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACAACATAATATCTCGTATGCCGTC	436	1.513258364570318	No Hit
CTTATACACATCTCCGAGCCCACGAGACTGATTACAATCTCGTATGCCGTC	56	0.1943634596695821	No Hit
CTTATACACATCTCCGAGCCCACGAGACGTTCATTAATCTCGTATGCCGTC	35	0.12147716229348883	RNA PCR Primer, Index 45 (95% over 21bp)
CTTATACACATCTCCGAGCCCACGAGACAGGATGTGATCTCGTATGCCGTC	29	0.10065250590031931	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AATCTCG	20	6.919225E-4	45.0	36
TGCCGTC	85	0.0	45.0	45
CGAGACG	20	6.919225E-4	45.0	23
GAGACGT	20	6.919225E-4	45.0	24
ATGCCGT	95	0.0	40.26316	44
ATCTCGT	100	0.0	38.25	37
CCACGAG	100	0.0	38.25	20
TATGCCG	100	0.0	38.25	43
CACGAGA	100	0.0	38.25	21
TCTCGTA	100	0.0	38.25	38
ACGAGAC	100	0.0	38.25	22
CGTATGC	100	0.0	38.25	41
TCGTATG	100	0.0	38.25	40
CGAGACA	60	1.4188117E-10	37.500004	23
CAACATA	55	2.5556801E-9	36.81818	28
ATAATAT	55	2.5556801E-9	36.81818	32
ACATAAT	55	2.5556801E-9	36.81818	30
TAATATC	55	2.5556801E-9	36.81818	33
CATAATA	55	2.5556801E-9	36.81818	31
AACATAA	55	2.5556801E-9	36.81818	29