FastQCFastQC Report
Thu 9 Apr 2015
H23NVBCXX l02n01 24h_79.34100000006706.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH23NVBCXX l02n01 24h_79.34100000006706.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences556807
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG1550.030.48295843
CCCACGA1650.029.99910219
GCCCACG1650.028.63807918
TGCCGTC1700.027.79578245
GTATCAA8700.026.9102441
CTCGTAT1800.026.24921439
GTAGCAC608.183541E-626.2492123
CGTATGC1900.026.05185141
TCTCGTA1850.025.53977838
TCGTATG1950.025.38385640
CGAGCCC2000.024.7514815
ATGCCGT1950.024.23004344
ACGAGAC1950.024.23004322
CCGAGCC2050.024.14778914
GGTATCA3550.024.0967671
CGTAACG602.4642944E-422.50134714
CCACGAG2150.021.97608620
AATCTCG1358.367351E-1121.66601836
CACGAGA2200.021.4766321
CGAGACT2000.021.3743623
Produced by FastQC (version 0.11.2)