H23NVBCXX l02n01 24h_61.341000000065ec.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23NVBCXX l02n01 24h_61.341000000065ec.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	4705
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGATCGTGTATCTCGTATGCCGTC	108	2.2954303931987248	No Hit
CTTATACACATCTCCGAGCCCACGAGACGTCTTAGTATCTCGTATGCCGTC	78	1.6578108395324123	No Hit
CTTATACACATCTCCGAGCCCACGAGACTAAGCATGATCTCGTATGCCGTC	69	1.4665249734325185	No Hit
CTTATACACATCTCCGAGCCCACGAGACTGATTACAATCTCGTATGCCGTC	61	1.2964930924548352	No Hit
CTTATACACATCTCCGAGCCCACGAGACGTTCATTAATCTCGTATGCCGTC	49	1.0414452709883104	RNA PCR Primer, Index 45 (95% over 21bp)
CTTATACACATCTCCGAGCCCACGAGACTGTTATACATCTCGTATGCCGTC	39	0.8289054197662061	RNA PCR Primer, Index 39 (95% over 21bp)
CTTATACACATCTCCGAGCCCACGAGACAGGATGTGATCTCGTATGCCGTC	20	0.4250797024442083	No Hit
CTTATACACATCTCCGAGCCCACGAGACCAAGGCGAATCTCGTATGCCGTC	16	0.34006376195536664	No Hit
CTTATACACATCTCCGAGCCCACGAGACGAGAGTTGATCTCGTATGCCGTC	14	0.2975557917109458	RNA PCR Primer, Index 23 (95% over 21bp)
CTTATACACATCTCCGAGCCCACGAGACAGTGTCTTATCTCGTATGCCGTC	12	0.255047821466525	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGTCTTAGTATCTCGTATGCCGT	11	0.23379383634431458	No Hit
CTTATACACATCTCCGAGCCCACGAGACAGATATAAATCTCGTATGCCGTC	8	0.17003188097768332	No Hit
CTTATACACATCTCCGAGCCCACGAGACCTGATTAAATCTCGTATGCCGTC	5	0.10626992561105207	No Hit
CTTATACACATCTCCGAGCCCACGAGACGACGCTATATCTCGTATGCCGTC	5	0.10626992561105207	No Hit
CTTATACACATCTCCGAGCCCACGAGACTCGACGGCATCTCGTATGCCGTC	5	0.10626992561105207	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CATGATC	25	3.3283784E-5	45.0	33
GTATGCC	80	0.0	45.0	42
ACTAAGC	25	3.3283784E-5	45.0	27
TGCCGTC	80	0.0	45.0	45
GTGTATC	25	3.3283784E-5	45.0	33
ATGATCT	25	3.3283784E-5	45.0	34
TAAGCAT	25	3.3283784E-5	45.0	29
TGATCTC	25	3.3283784E-5	45.0	35
TATGCCG	80	0.0	45.0	43
GTATCTC	40	4.667527E-9	45.0	35
GATCGTG	25	3.3283784E-5	45.0	29
TCGTGTA	25	3.3283784E-5	45.0	31
TATCTCG	50	1.2732926E-11	45.0	36
AGACGAT	25	3.3283784E-5	45.0	25
GATCTCG	25	3.3283784E-5	45.0	36
ATGCCGT	80	0.0	45.0	44
CGTATGC	80	0.0	45.0	41
GACGATC	25	3.3283784E-5	45.0	26
GCATGAT	25	3.3283784E-5	45.0	32
CGTGTAT	25	3.3283784E-5	45.0	32