H23NVBCXX l02n01 24h_47.34100000006508.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23NVBCXX l02n01 24h_47.34100000006508.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	16309
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCATTCCGAATCTCGTATGCCGTC	7588	46.52645778404562	RNA PCR Primer, Index 46 (95% over 21bp)
CTCTTATACACATCTCCGAGCCCACGAGACCATTCCGAATCTCGTATGCCG	595	3.648292353915016	No Hit
TCTTATACACATCTCCGAGCCCACGAGACCATTCCGAATCTCGTATGCCGT	326	1.9988963149181433	No Hit
TTATACACATCTCCGAGCCCACGAGACCATTCCGAATCTCGTATGCCGTCT	64	0.3924213624379177	RNA PCR Primer, Index 18 (95% over 21bp)
CTTATACACATCTCCGAGCCCACGAGACAGATATAAATCTCGTATGCCGTC	48	0.2943160218284383	No Hit
CTTATACACATCTCCGAGCCCACGCTGTCTCTTATACACATCTCCGAGCCC	38	0.23300018394751365	No Hit
CTTATACACATCTCCGAGCCCACGAGACTGATTACAATCTCGTATGCCGTC	30	0.18394751364277392	No Hit
CTTATACACATCTCCGAGCCCACGAGACTGTTATACATCTCGTATGCCGTC	30	0.18394751364277392	RNA PCR Primer, Index 39 (95% over 21bp)
CTTATACACATCTCCGAGCCCACGAGACTAGATCCTATCTCGTATGCCGTC	25	0.1532895947023116	No Hit
CTTATACACATCTCCGAGCCCACGAGACGTCTTAGTATCTCGTATGCCGTC	24	0.14715801091421915	No Hit
CTTATACACATCTCCGAGCCCACGAGACGTTCATTAATCTCGTATGCCGTC	21	0.12876325954994175	RNA PCR Primer, Index 45 (95% over 21bp)
CTTATACACATCTCCGAGCCCACGAGACGATCGTGTATCTCGTATGCCGTC	21	0.12876325954994175	No Hit
CTTATACACATCTCCGAGCCCACGAGACTAAGCATGATCTCGTATGCCGTC	21	0.12876325954994175	No Hit
ATACACATCTCCGAGCCCACGCTGTCTCTTATACACATCTCCGAGCCCACG	19	0.11650009197375683	No Hit
CCGTTGCAGTATCGATTCGCTCTGCATTTTTCTCAATCCATGAAGCCAAGG	18	0.11036850818566435	No Hit
GCTTATACACATCTCCGAGCCCACGAGACCATTCCGAATCTCGTATGCCGT	17	0.1042369243975719	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CATCTCG	20	6.832682E-4	44.996933	36
TGCCGTC	815	0.0	44.72088	45
ATGCCGT	850	0.0	42.879433	44
GTATGCC	915	0.0	39.833347	42
ATCTCGT	915	0.0	39.833347	37
TATGCCG	915	0.0	39.833347	43
TCTCGTA	915	0.0	39.833347	38
CGTATGC	915	0.0	39.833347	41
CTCGTAT	915	0.0	39.833347	39
AATCTCG	890	0.0	39.68831	36
GAATCTC	885	0.0	39.658314	35
CGAATCT	880	0.0	39.62798	34
TCGTATG	920	0.0	39.616863	40
TTCCGAA	875	0.0	39.5973	31
TCCGAAT	875	0.0	39.5973	32
CCGAATC	875	0.0	39.5973	33
CATTCCG	895	0.0	38.712444	29
ATTCCGA	895	0.0	38.712444	30
CCACGAG	945	0.0	38.568798	20
CACGAGA	945	0.0	38.568798	21