H23NVBCXX l02n01 18h_70.34100000005335.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23NVBCXX l02n01 18h_70.34100000005335.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2673
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGTTCATTAATCTCGTATGCCGTC	24	0.8978675645342313	RNA PCR Primer, Index 45 (95% over 21bp)
CTTATACACATCTCCGAGCCCACGAGACTGCGACCTATCTCGTATGCCGTC	17	0.6359895248784138	No Hit
CTTATACACATCTCCGAGCCCACGAGACCTATTCAAATCTCGTATGCCGTC	16	0.5985783763561541	RNA PCR Primer, Index 13 (95% over 21bp)
CTTATACACATCTCCGAGCCCACGAGACGTCTTAGTATCTCGTATGCCGTC	13	0.4863449307893753	No Hit
CTTATACACATCTCCGAGCCCACGAGACAGATATAAATCTCGTATGCCGTC	13	0.4863449307893753	No Hit
CTTATACACATCTCCGAGCCCACGAGACGAGAGTTGATCTCGTATGCCGTC	10	0.3741114852225963	RNA PCR Primer, Index 23 (95% over 21bp)
CTTATACACATCTCCGAGCCCACGAGACAGTGTCTTATCTCGTATGCCGTC	7	0.2618780396558174	No Hit
CTTATACACATCTCCGAGCCCACGAGACAGGATGTGATCTCGTATGCCGTC	7	0.2618780396558174	No Hit
CTTATACACATCTCCGAGCCCACGAGACATAGACAAATCTCGTATGCCGTC	6	0.22446689113355783	No Hit
CTTATACACATCTCCGAGCCCACGAGACTCAACTGTATCTCGTATGCCGTC	6	0.22446689113355783	No Hit
CTTATACACATCTCCGAGCCCACGAGACCTGATTAAATCTCGTATGCCGTC	4	0.14964459408903852	No Hit
CTTATACACATCTCCGAGCCCACGAGACTTGCTGGAATCTCGTATGCCGTC	4	0.14964459408903852	No Hit
TCTTATACACATCTCCGAGCCCACGAGACCTATTCAAATCTCGTATGCCGT	3	0.11223344556677892	No Hit
CTTATACACATCTCCGAGCCCACGAGACGATAACCTATCTCGTATGCCGTC	3	0.11223344556677892	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGCCCAC	25	2.9346324E-5	45.000004	17
GCCCACG	25	2.9346324E-5	45.000004	18
TGCCGTC	25	2.9346324E-5	45.000004	45
GAGCCCA	25	2.9346324E-5	45.000004	16
CCCACGA	25	2.9346324E-5	45.000004	19
TATCTCG	20	5.8342406E-4	45.0	36
CGAGCCC	20	5.8342406E-4	45.0	15
CCGAGCC	20	5.8342406E-4	45.0	14
TCCGAGC	20	5.8342406E-4	45.0	13
GTATGCC	30	8.615986E-5	37.500004	42
ATCTCGT	30	8.615986E-5	37.500004	37
CCACGAG	30	8.615986E-5	37.500004	20
TATGCCG	30	8.615986E-5	37.500004	43
CACGAGA	30	8.615986E-5	37.500004	21
ACATCTC	30	8.615986E-5	37.500004	8
TCTCGTA	30	8.615986E-5	37.500004	38
ACGAGAC	30	8.615986E-5	37.500004	22
ATGCCGT	30	8.615986E-5	37.500004	44
CGTATGC	30	8.615986E-5	37.500004	41
TCGTATG	30	8.615986E-5	37.500004	40