H23NVBCXX l02n01 12h_48.3410000000719d.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23NVBCXX l02n01 12h_48.3410000000719d.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	42041
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCATTCCGAATCTCGTATGCCGTC	2127	5.059346828096382	RNA PCR Primer, Index 46 (95% over 21bp)
TTATACACATCTCCGAGCCCACGAGACCATTCCGAATCTCGTATGCCGTCT	244	0.5803858138483861	RNA PCR Primer, Index 18 (95% over 21bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	160	0.3805808615399253	No Hit
ATATGAACTCTCGCAAACGATAAACCTGTTATCCCTAGCGTAACTTTTATT	102	0.2426202992317024	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	71	0.16888275730834185	No Hit
CATATGTTCTATCCTTGAGAATGATCCATGTGCTGAGGAGAAGAATGTGTA	68	0.16174686615446826	No Hit
GTATAGATTCTATCCTCGGAAGGAAACAAGAATAGAAGAAGAACCTCTAAT	57	0.13558193192359838	No Hit
GTACATAACGAAATGAAGGCAGAAATAAAGATGTTCTTTGAAACCAATGAG	55	0.13082467115434931	No Hit
GTGTATATGTGCCACATTTTCTTAATCCAGTCTATCATTGTTGGACATTTG	51	0.1213101496158512	No Hit
CTATTATTGGAGCATATCAGCAGGAAAAACAGTTCTACTGAAAAGCAAAAA	45	0.107038367308104	No Hit
ATACACATCTCCGAGCCCACGAGACCATTCCGAATCTCGTATGCCGTCTTC	45	0.107038367308104	RNA PCR Primer, Index 46 (95% over 24bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CTTATAC	275	40.090908	1
GTATGCC	280	39.375	42
TATGCCG	280	39.375	43
CATTCCG	280	39.375	29
CGTATGC	280	39.375	41
TCGTATG	280	39.375	40
ATTCCGA	280	39.375	30
GACCATT	280	39.375	26
CTCGTAT	280	39.375	39
TGCCGTC	275	39.272728	45
ATGCCGT	275	39.272728	44
GCCCACG	290	38.793102	18
CCCACGA	290	38.793102	19
ATCTCCG	285	38.68421	10
TTCCGAA	285	38.68421	31
TCTCGTA	285	38.68421	38
TCTCCGA	285	38.68421	11
AGACCAT	285	38.68421	25
CCGAATC	285	38.68421	33
AGCCCAC	290	38.01724	17