FastQCFastQC Report
Thu 9 Apr 2015
H23NVBCXX l02n01 0h_35.34100000007710.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH23NVBCXX l02n01 0h_35.34100000007710.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences189874
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACAGGATGTGATCTCGTATGCCGTC7390.38920547310321585No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG950.044.99736843
CGAGACA950.044.99736823
ATGCCGT950.044.99736844
ACGAGAC900.044.99736822
CGTATGC1000.042.74749841
CTCGTAT1000.042.74749839
TCTCGTA1000.042.74749838
TCGTATG1000.042.74749840
CCGAGCC1050.040.71190314
CGAGCCC1050.040.71190315
GCCCACG1000.040.49762718
CCCACGA1000.040.49762719
ATCTCGT1100.038.86136637
TGCCGTC1100.038.86136645
CCACGAG1050.038.5691720
TCCGAGC1150.037.17173413
CACGAGA1100.036.8160321
CTCCGAG1250.034.19799812
GTATGCC1250.034.19799842
AGCCCAC1200.033.74802417