H23LNBCXX_l02n01_bir_1228_pcontrolb_77.351000000434d5.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23LNBCXX_l02n01_bir_1228_pcontrolb_77.351000000434d5.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	214824
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTTGCTGGAATCTCGTATGCCGTC	14044	6.537444605816854	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTTGCTGGAATCTCGTATGCCGT	7827	3.643447659479388	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTTGCTGGAATCTCGTATGCCG	1711	0.7964659442147991	No Hit
GGTATAACACAGGAACGGAAACATAGTAGAACACTTATTCATCAGGGATTA	358	0.16664804677317246	No Hit
AAAAAGTACTCTGCGTTGATACCTGTCTCTTATACACATCTCCGAGCCCAC	347	0.16152757606226492	No Hit
GTATCAACGCAGAGTACTTTTTCTGTCTCTTATACACATCTCCGAGCCCAC	340	0.1582690947007783	No Hit
GTATAATCCCTGATGAATAAGTGTTCTACTATGTTTCCGTTCCTGTGTTAT	251	0.11683983167616281	No Hit
AAAAAGTACTCTGCGTTGATACCCTGTCTCTTATACACATCTCCGAGCCCA	230	0.10706438759170298	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGCATAC	30	2.15424E-6	45.00908	1
TGCCGTC	1545	0.0	44.124844	45
GCCTTAT	35	6.2159743E-6	38.579212	1
CGAGTTG	35	6.2259223E-6	38.570232	40
TTAGACT	30	1.1354842E-4	37.507565	4
CTACCAT	30	1.1354842E-4	37.507565	6
AGTGGGG	30	1.1370421E-4	37.498837	31
AGCTCCC	30	1.1370421E-4	37.498837	37
GCCGTCT	30	1.1370421E-4	37.498837	45
TTTACCG	25	0.002101222	36.007263	5
AATGCGT	25	0.002101222	36.007263	6
GCTACGA	25	0.002103625	35.998882	12
TAAGACG	25	0.002103625	35.998882	10
AAAGCAC	25	0.002103625	35.998882	21
GATCGAG	40	1.5550195E-5	33.74895	37
ACGCAAG	40	1.5550195E-5	33.74895	17
AATCCCT	50	1.968614E-6	31.506355	5
GTTTATC	45	3.4729914E-5	30.006054	1
ATGGGTG	30	0.0051329858	30.006052	6
ATGGGAC	30	0.0051329858	30.006052	6