H23LNBCXX_l02n01_bir_1228_pcontrolb_76.351000000434bb.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23LNBCXX_l02n01_bir_1228_pcontrolb_76.351000000434bb.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	315839
Sequences flagged as poor quality	0
Sequence length	51
%GC	37

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTTGCTGGAATCTCGTATGCCGTC	8064	2.5531995732002697	No Hit
ACAAACATAAGTCTCAGCCCTCAAAAATTTCCTGTTATGTCTTTGATTCTT	2162	0.6845259768426318	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTTGCTGGAATCTCGTATGCCGT	1261	0.3992540503231077	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTTGCTGGAATCTCGTATGCCG	400	0.12664680422620384	No Hit
GGAAGAAGGATTTCATTGAGATACTCAAGACTCTTGAATCCTGTCTCTTAT	396	0.12538033618394182	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGAACT	20	7.0109026E-4	45.01901	4
TATACGC	20	7.0109026E-4	45.01901	4
GGAGGTA	20	7.0109026E-4	45.01901	2
GCGAGAT	20	7.027335E-4	44.997627	42
TCCGCTC	20	7.027335E-4	44.997627	8
GTCGAGG	20	7.027335E-4	44.997627	36
CGCGGTT	20	7.027335E-4	44.997627	29
GTCCTAG	20	7.027335E-4	44.997627	30
AGTGCTC	20	7.027335E-4	44.997627	40
TACGCGG	20	7.027335E-4	44.997627	27
TCAGCGC	20	7.027335E-4	44.997627	37
CCGTTAG	20	7.027335E-4	44.997627	28
CTAGCTG	20	7.027335E-4	44.997627	39
GCACGGT	25	3.8855702E-5	44.997623	27
CGCAGAT	25	3.8855702E-5	44.997623	24
AAGGGGG	25	3.8855702E-5	44.997623	25
TGCCGTC	795	0.0	44.714622	45
AGCCCTC	190	0.0	43.81348	16
CAGCCCT	210	0.0	39.640766	15
GCCCTCA	210	0.0	39.640766	17