H23LNBCXX_l02n01_bir_1228_pcontrolb_71.3510000004341b.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23LNBCXX_l02n01_bir_1228_pcontrolb_71.3510000004341b.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	113036
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGACGCTATATCTCGTATGCCGTC	9346	8.268162355355816	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGACGCTATATCTCGTATGCCGT	3916	3.464383028415726	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGACGCTATATCTCGTATGCCG	963	0.8519409745567783	No Hit
AAAAAGTACTCTGCGTTGATACCTGTCTCTTATACACATCTCCGAGCCCAC	222	0.19639760784174953	No Hit
GTATCAACGCAGAGTACTTTTTCTGTCTCTTATACACATCTCCGAGCCCAC	151	0.13358576028875754	No Hit
GTTATGGTTCATTTGATCGTATGGTTTACTTGGATAACTGTGGTAATTCTG	125	0.11058423864963374	No Hit
GTACCAACATTACGAATTGATGTTATACTAACGCTGTCTCTTATACACATC	123	0.10881489083123962	No Hit
ATTACACAGTCTCAGGTAGTATCTTTATAGCAGCATGAGAATGGACTAATA	118	0.10439152128525425	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGATCGT	20	7.006287E-4	45.0	14
GGTGTGA	20	7.006287E-4	45.0	42
CGTATGG	20	7.006287E-4	45.0	18
TTTACGC	20	7.006287E-4	45.0	22
GCGAATA	25	3.8684433E-5	45.0	26
TTAGCGA	25	3.8684433E-5	45.0	23
TAGCGAA	25	3.8684433E-5	45.0	24
ATTCGAC	20	7.006287E-4	45.0	19
TTTCCGT	25	3.8684433E-5	45.0	11
TGTGCTC	20	7.006287E-4	45.0	10
TAACGAG	20	7.006287E-4	45.0	41
GGCCATT	20	7.006287E-4	45.0	11
TACGCTA	20	7.006287E-4	45.0	24
AGTGACT	20	7.006287E-4	45.0	8
CGTAGCA	20	7.006287E-4	45.0	42
GGGAACC	20	7.006287E-4	45.0	30
CGCTAAA	20	7.006287E-4	45.0	26
GTGTCAG	20	7.006287E-4	45.0	31
CACAGTC	20	7.006287E-4	45.0	5
AGCGAAT	25	3.8684433E-5	45.0	25